faq
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faq [2019/11/13 09:48] – [BLUP] shogo | faq [2023/12/20 23:25] – [Frequent mistakes in data, pedigree, and parameter files for BLUPF90 programs] shogo | ||
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====== | ====== | ||
- | Download {{:blupf90_ALL7.pdf|BLUPF90 manual}} | + | Download {{:blupf90_ALL8.pdf|BLUPF90 manual}} |
==== Technical problems and segmentation fault ==== | ==== Technical problems and segmentation fault ==== | ||
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* [[FAQ.intellibs|Installation of Intel Libraries]]: | * [[FAQ.intellibs|Installation of Intel Libraries]]: | ||
- | ==== Frequent mistakes in data, pedigree, and parameter files for BLUPF90 programs ==== | + | |
+ | ==== Frequent mistakes in data, pedigree, and parameter files for BLUPF90 programs | ||
* [[[[FAQ.data|data]] | * [[[[FAQ.data|data]] | ||
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* [[[[FAQ.example|examples]] | * [[[[FAQ.example|examples]] | ||
- | ==== Data preparation program | + | === Data preparation program === |
* [[[[readme.renumf90|renumf90]] | * [[[[readme.renumf90|renumf90]] | ||
* [[[[FAQ.renum_example|examples]] | * [[[[FAQ.renum_example|examples]] | ||
- | ==== REML ==== | + | === REML === |
+ | * [[readme.blupf90plus|blupf90+]]: | ||
* [[readme.reml|remlf90]]: | * [[readme.reml|remlf90]]: | ||
* [[readme.aireml|airemlf90]]: | * [[readme.aireml|airemlf90]]: | ||
- | * [[readme.blupf90new|blupf90test]]: This is a beta version for a combined program of airemlf90 and blupf90 | + | * [[FAQ.vc#I got weird messages and nonsense estimates in AI REML. What is it?|I got weird messages and nonsense estimates in AI REML. What is it?]] |
- | ==== Gibbs sampler | + | === Gibbs sampler === |
OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed (known) variances | OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed (known) variances | ||
+ | * [[readme.gibbsf90plus|gibbsf90+]]: | ||
* [[readme.gibbs1|gibbs1f90]]: | * [[readme.gibbs1|gibbs1f90]]: | ||
* [[readme.gibbs2|gibbs2f90]]: | * [[readme.gibbs2|gibbs2f90]]: | ||
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* [[readme.thrgibbs1|thrgibbs1f90]]: | * [[readme.thrgibbs1|thrgibbs1f90]]: | ||
* [[readme.thrgibbs3|thrgibbs3f90]]: | * [[readme.thrgibbs3|thrgibbs3f90]]: | ||
- | * [[readme.gibbsf90new|gibbsf90test]]: This is a beta version for a combined | + | * [[faq.gibbs|General questions]]: Common to all Gibbs samplers |
- | ==== Post-Gibbs Analysis | + | === Post-Gibbs Analysis === |
* [[readme.postgibbs|postgibbsf90]]: | * [[readme.postgibbs|postgibbsf90]]: | ||
- | ==== BLUP ==== | ||
- | | + | === BLUP === |
- | * [[readme.blupf90new|blupf90test]]: This is a beta version | + | |
+ | | ||
+ | * [[readme.pcgtest|blup90iod3 | ||
+ | * [[readme.thr1pcg|cblup90iod2]]: (G)BLUP with threshold + linear model for a large number | ||
* [[readme.predictf90|predictf90]]: | * [[readme.predictf90|predictf90]]: | ||
+ | |||
+ | * [[readme.blupf90|blupf90]]: | ||
* [[readme.pcg2|blup90iod2]]: | * [[readme.pcg2|blup90iod2]]: | ||
* [[readme.pcg2r|blup90iod2r]]: | * [[readme.pcg2r|blup90iod2r]]: | ||
* [[readme.pcg2hr|blup90iod2hr]]: | * [[readme.pcg2hr|blup90iod2hr]]: | ||
- | * [[readme.thr1pcg|cblup90iod2]]: | ||
* [[blup90mbe2]]: | * [[blup90mbe2]]: | ||
- | ==== Accuracy (approximation) | + | |
+ | === Accuracy (approximation) === | ||
* [[readme.acc|accf90]]: | * [[readme.acc|accf90]]: | ||
* [[readme.accgs|accf90GS]]: | * [[readme.accgs|accf90GS]]: | ||
+ | * [[readme.accgs2|accf90GS2]]: | ||
- | ==== Genomic Analysis | + | === Genomic Analysis === |
* [[readme.pregsf90|preGSf90]]: | * [[readme.pregsf90|preGSf90]]: |
faq.txt · Last modified: 2024/05/17 18:17 by dani