faq
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faq [2023/09/04 20:26] – [Individual program] shogo | faq [2023/12/20 23:27] – [Frequent mistakes in data, pedigree, and parameter files for BLUPF90 programs] shogo | ||
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* [[FAQ.intellibs|Installation of Intel Libraries]]: | * [[FAQ.intellibs|Installation of Intel Libraries]]: | ||
- | ==== Variance Components ==== | ||
- | |||
- | * [[FAQ.vc#I got weird messages and nonsense estimates in AI REML. What is it?|I got weird messages and nonsense estimates in AI REML. What is it?]] | ||
==== Frequent mistakes in data, pedigree, and parameter files for BLUPF90 programs ===== | ==== Frequent mistakes in data, pedigree, and parameter files for BLUPF90 programs ===== | ||
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* [[[[FAQ.parameter|parameter]] | * [[[[FAQ.parameter|parameter]] | ||
* [[[[FAQ.example|examples]] | * [[[[FAQ.example|examples]] | ||
- | |||
- | ==== Individual program ==== | ||
=== Data preparation program === | === Data preparation program === | ||
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=== REML === | === REML === | ||
+ | |||
+ | * [[readme.blupf90plus|blupf90+]]: | ||
* [[readme.reml|remlf90]]: | * [[readme.reml|remlf90]]: | ||
* [[readme.aireml|airemlf90]]: | * [[readme.aireml|airemlf90]]: | ||
- | * [[readme.blupf90plus|blupf90+]]: This is a combination of remlf90, airemlf90, and blupf90 | + | * [[FAQ.vc#I got weird messages and nonsense estimates in AI REML. What is it?|I got weird messages and nonsense estimates in AI REML. What is it?]] |
=== Gibbs sampler === | === Gibbs sampler === | ||
OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed (known) variances | OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed (known) variances | ||
+ | |||
+ | * [[readme.gibbsf90plus|gibbsf90+]]: | ||
* [[readme.gibbs1|gibbs1f90]]: | * [[readme.gibbs1|gibbs1f90]]: | ||
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* [[readme.thrgibbs1|thrgibbs1f90]]: | * [[readme.thrgibbs1|thrgibbs1f90]]: | ||
* [[readme.thrgibbs3|thrgibbs3f90]]: | * [[readme.thrgibbs3|thrgibbs3f90]]: | ||
- | * [[readme.gibbsf90plus|gibbsf90+]]: | + | |
* [[faq.gibbs|General questions]]: | * [[faq.gibbs|General questions]]: | ||
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=== BLUP === | === BLUP === | ||
- | * [[readme.blupf90|blupf90]]: | ||
* [[readme.blupf90plus|blupf90+]]: | * [[readme.blupf90plus|blupf90+]]: | ||
+ | * [[readme.pcgtest|blup90iod3 (new blup90iod)]] - a combined program of blup90iod2, blu90iodrr, blup90iod2hr, | ||
+ | * [[readme.thr1pcg|cblup90iod2]]: | ||
* [[readme.predictf90|predictf90]]: | * [[readme.predictf90|predictf90]]: | ||
+ | |||
+ | * [[readme.blupf90|blupf90]]: | ||
* [[readme.pcg2|blup90iod2]]: | * [[readme.pcg2|blup90iod2]]: | ||
* [[readme.pcg2r|blup90iod2r]]: | * [[readme.pcg2r|blup90iod2r]]: | ||
* [[readme.pcg2hr|blup90iod2hr]]: | * [[readme.pcg2hr|blup90iod2hr]]: | ||
- | * [[readme.thr1pcg|cblup90iod2]]: | ||
* [[blup90mbe2]]: | * [[blup90mbe2]]: | ||
- | * [[blup90iod3]]: | ||
=== Accuracy (approximation) === | === Accuracy (approximation) === | ||
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* [[readme.acc|accf90]]: | * [[readme.acc|accf90]]: | ||
* [[readme.accgs|accf90GS]]: | * [[readme.accgs|accf90GS]]: | ||
- | * [[readme.accgs2|accf90GS2]]: | + | * [[readme.accgs2|accf90GS2]]: |
=== Genomic Analysis === | === Genomic Analysis === |
faq.txt · Last modified: 2024/05/17 18:17 by dani