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faq [2023/09/04 20:34] – [Individual program] shogofaq [2023/12/20 23:22] – [Individual program] shogo
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     * [[FAQ.intellibs|Installation of Intel Libraries]]: For users with customized programs     * [[FAQ.intellibs|Installation of Intel Libraries]]: For users with customized programs
  
-==== Variance Components ==== 
- 
-    * [[FAQ.vc#I got weird messages and nonsense estimates in AI REML. What is it?|I got weird messages and nonsense estimates in AI REML. What is it?]] 
  
 ==== Frequent mistakes in data, pedigree, and parameter files for BLUPF90 programs ===== ==== Frequent mistakes in data, pedigree, and parameter files for BLUPF90 programs =====
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     * [[[[FAQ.parameter|parameter]]     * [[[[FAQ.parameter|parameter]]
     * [[[[FAQ.example|examples]]     * [[[[FAQ.example|examples]]
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-==== Individual program ==== 
  
 === Data preparation program === === Data preparation program ===
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     * [[readme.reml|remlf90]]: EM algorithm     * [[readme.reml|remlf90]]: EM algorithm
     * [[readme.aireml|airemlf90]]: Average Information REML + REMLF90 including heterogeneous residual variances [[http://nce.ads.uga.edu/html/projects/AI_SE_revised.pdf|Standard Errors (PDF)]]      * [[readme.aireml|airemlf90]]: Average Information REML + REMLF90 including heterogeneous residual variances [[http://nce.ads.uga.edu/html/projects/AI_SE_revised.pdf|Standard Errors (PDF)]] 
 +    * [[FAQ.vc#I got weird messages and nonsense estimates in AI REML. What is it?|I got weird messages and nonsense estimates in AI REML. What is it?]]
     * [[readme.blupf90plus|blupf90+]]: This is a combination of remlf90, airemlf90, and blupf90     * [[readme.blupf90plus|blupf90+]]: This is a combination of remlf90, airemlf90, and blupf90
  
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     * [[readme.thr1pcg|cblup90iod2]]: (G)BLUP with threshold + linear model for a large number of equations (available only under some conditions)      * [[readme.thr1pcg|cblup90iod2]]: (G)BLUP with threshold + linear model for a large number of equations (available only under some conditions) 
     * [[blup90mbe2]]: (G)BLUP for a large number of equations for multi-breed evaluations (available only under some conditions). The prior external EBV can be from other breeds, lines, foreign origins, ...      * [[blup90mbe2]]: (G)BLUP for a large number of equations for multi-breed evaluations (available only under some conditions). The prior external EBV can be from other breeds, lines, foreign origins, ... 
-  * [[readme.pcgtest|BLUP90IOD3 (new BLUP90IOD)]] - a combined program of BLUP90IOD2BLUP90IOD2RR, and BLUP90IOD2HR with new features+  * [[readme.pcgtest|blup90iod3 (new blup90iod)]] - a combined program of blup90iod2blu90iodrr, blup90iod2hr, and blup90mbe with new features
  
 === Accuracy (approximation) === === Accuracy (approximation) ===
faq.txt · Last modified: 2024/05/17 18:17 by dani

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