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faq [2023/12/20 23:27] – [Frequent mistakes in data, pedigree, and parameter files for BLUPF90 programs] shogofaq [2023/12/20 23:31] – [Frequent mistakes in data, pedigree, and parameter files for BLUPF90 programs] shogo
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     * [[FAQ.vc#I got weird messages and nonsense estimates in AI REML. What is it?|I got weird messages and nonsense estimates in AI REML. What is it?]]     * [[FAQ.vc#I got weird messages and nonsense estimates in AI REML. What is it?|I got weird messages and nonsense estimates in AI REML. What is it?]]
  
-=== Gibbs sampler ===+=== Gibbs Sampler ===
 OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed (known) variances OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed (known) variances
  
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     * [[readme.pregsf90|postGSf90]]: Post-analysis of genomic programs with options (GWAS)      * [[readme.pregsf90|postGSf90]]: Post-analysis of genomic programs with options (GWAS) 
     * [[readme.predf90|predf90]]: Prediction of EBV using only SNP      * [[readme.predf90|predf90]]: Prediction of EBV using only SNP 
 +    * [[readme.qcf90|qcf90]] - a quality-control tool on genotypes and pedigree information (Y. Masuda)
 +
 +=== Additional programs ===
 +
 +    * [[Readme.Inbupgf90|inbupgf90]] - a program to calculate inbreeding coefficients with incomplete pedigree (I. Aguilar) 
 +    * [[Readme.SeekParentf90|seekparentf90]] -  a program to verify paternity and parent discovery using SNP markers (I. Aguilar)
  
  
faq.txt · Last modified: 2024/05/17 18:17 by dani

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