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faq [2023/12/20 23:31] – [Frequent mistakes in data, pedigree, and parameter files for BLUPF90 programs] shogofaq [2023/12/28 22:39] – [Frequent mistakes in data, pedigree, and parameter files for BLUPF90 programs] shogo
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-======  FAQ: examples and options for BLUPF90 family programs ======+======  FAQ: examplesoptions, and tips for BLUPF90 family programs ======
  
 Download {{:blupf90_ALL8.pdf|BLUPF90 manual}} Download {{:blupf90_ALL8.pdf|BLUPF90 manual}}
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     * [[readme.blupf90plus|blupf90+]]: This is a combination of remlf90, airemlf90, and blupf90     * [[readme.blupf90plus|blupf90+]]: This is a combination of remlf90, airemlf90, and blupf90
-    * [[readme.pcgtest|blup90iod3 (new blup90iod)]] - a combined program of blup90iod2, blu90iodrr, blup90iod2hr, and blup90mbe with new features+    * [[readme.pcgtest|blup90iod3 (new blup90iod)]] - a combined program of blup90iod2, blu90iod2r, blup90iod2hr, and blup90mbe2 with new features
     * [[readme.thr1pcg|cblup90iod2]]: (G)BLUP with threshold + linear model for a large number of equations (available only under some conditions)      * [[readme.thr1pcg|cblup90iod2]]: (G)BLUP with threshold + linear model for a large number of equations (available only under some conditions) 
     * [[readme.predictf90|predictf90]]: Calculates y-hat     * [[readme.predictf90|predictf90]]: Calculates y-hat
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     * [[readme.pregsf90|postGSf90]]: Post-analysis of genomic programs with options (GWAS)      * [[readme.pregsf90|postGSf90]]: Post-analysis of genomic programs with options (GWAS) 
     * [[readme.predf90|predf90]]: Prediction of EBV using only SNP      * [[readme.predf90|predf90]]: Prediction of EBV using only SNP 
-    * [[readme.qcf90|qcf90]] - a quality-control tool on genotypes and pedigree information (Y. Masuda)+    * [[readme.qcf90|qcf90]] - a quality-control tool on genotypes and pedigree information
  
 === Additional programs === === Additional programs ===
  
-    * [[Readme.Inbupgf90|inbupgf90]] - a program to calculate inbreeding coefficients with incomplete pedigree (I. Aguilar)  +    * [[Readme.Inbupgf90|inbupgf90]] - a program to calculate inbreeding coefficients with incomplete pedigree  
-    * [[Readme.SeekParentf90|seekparentf90]] -  a program to verify paternity and parent discovery using SNP markers (I. Aguilar)+    * [[Readme.SeekParentf90|seekparentf90]] -  a program to verify paternity and parent discovery using SNP markers
  
  
faq.txt · Last modified: 2024/05/17 18:17 by dani

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