readme.aireml
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readme.aireml [2012/05/29 17:06] – shogo | readme.aireml [2012/05/30 13:30] – shogo | ||
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Convergence criterion (default 1d-10). | Convergence criterion (default 1d-10). | ||
< | < | ||
- | OPTION maxrounds | + | OPTION maxrounds |
</ | </ | ||
- | Maximum rounds (default 5000). When it is negative, the program calculates BLUP without | + | Maximum rounds (default 5000). When the number < 2, the program calculates BLUP without |
< | < | ||
OPTION EM-REML 10 | OPTION EM-REML 10 | ||
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OPTION sol se | OPTION sol se | ||
</ | </ | ||
- | Store solutions and s.e. | + | Store solutions and those s.e. |
< | < | ||
OPTION missing -1 | OPTION missing -1 | ||
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OPTION hetres_pol 4.0 0.1 0.1 | OPTION hetres_pol 4.0 0.1 0.1 | ||
</ | </ | ||
- | Initial values of coefficients for heterogeneous residual variances | + | Initial values of coefficients for heterogeneous residual variances |
**Heterogeneous residual variances for multiple traits** | **Heterogeneous residual variances for multiple traits** | ||
+ | Convergence will be very slow with multiple trait heterogeneous residual variances | ||
< | < | ||
OPTION hetres_pos 10 10 11 11 | OPTION hetres_pos 10 10 11 11 | ||
</ | </ | ||
- | Specify the position of covariables (trait first). | + | or |
+ | < | ||
+ | OPTION hetres_pos 10 11 12 13 | ||
+ | </ | ||
+ | Specify the position of covariables (trait first). "10 10" or "10 11" could be linear for first and second traits, and "11 11" or "12 13" could be quadratic. | ||
< | < | ||
OPTION hetres_pol 4.0 4.0 0.1 0.1 0.01 0.01 | OPTION hetres_pol 4.0 4.0 0.1 0.1 0.01 0.01 | ||
</ | </ | ||
- | Initial values of coefficients for heterogeneous residual variances | + | Initial values of coefficients for heterogeneous residual variances |
readme.aireml.txt · Last modified: 2024/03/25 18:22 by 127.0.0.1