readme.aireml
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readme.aireml [2016/05/29 11:49] – [Options] ignacio | readme.aireml [2020/11/12 20:15] – [Options] shogo | ||
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===== Options ===== | ===== Options ===== | ||
< | < | ||
- | OPTION conv_crit 1d-12 | + | OPTION conv_crit 1d-10 |
</ | </ | ||
- | Convergence criterion (default 1d-10). | + | Convergence criterion (default 1d-12). |
< | < | ||
- | OPTION maxrounds | + | OPTION maxrounds |
</ | </ | ||
- | Maximum rounds (default 5000). When the number | + | Maximum rounds (default 5000). When n = 0, the program calculates BLUP without iterating REML and provides |
< | < | ||
- | OPTION EM-REML | + | OPTION EM-REML |
</ | </ | ||
- | Run EM-REML (REMLF90) for first 10 rounds to get initial variances within the parameter space (default 0). | + | Run EM-REML (REMLF90) for first n rounds to get initial |
< | < | ||
OPTION use_yams | OPTION use_yams | ||
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OPTION missing -999 | OPTION missing -999 | ||
</ | </ | ||
- | Specify the missing value (default 0). | + | Specify the missing value (default 0) in integer. |
< | < | ||
OPTION constant_var 5 1 2 ... | OPTION constant_var 5 1 2 ... | ||
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OPTION hetres_pos 10 11 | OPTION hetres_pos 10 11 | ||
</ | </ | ||
- | Specify the position | + | Specify the column positions |
< | < | ||
OPTION hetres_pol 4.0 0.1 0.1 | OPTION hetres_pol 4.0 0.1 0.1 | ||
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OPTION hetres_pos 10 11 12 13 | OPTION hetres_pos 10 11 12 13 | ||
</ | </ | ||
- | Specify the position | + | Specify the column positions |
"10 10" or "10 11" could be linear for first and second traits.\\ | "10 10" or "10 11" could be linear for first and second traits.\\ | ||
"11 11" or "12 13" could be quadratic. | "11 11" or "12 13" could be quadratic. |
readme.aireml.txt · Last modified: 2024/03/25 18:22 by 127.0.0.1