readme.blupf90
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| readme.blupf90 [2012/05/30 00:53] – [BLUPF90] ignacio | readme.blupf90 [2014/08/01 17:00] – shogo | ||
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| ====== BLUPF90 ====== | ====== BLUPF90 ====== | ||
| - | The documentation for blupf90 is available separately as a PDF document | + | ===== Summary ===== |
| + | The documentation for blupf90 is available separately as a {{:blupf90.pdf|PDF}} document. | ||
| + | \\ | ||
| + | See PREGSF90 with genotypes (SNP) for options. | ||
| ===== Options ===== | ===== Options ===== | ||
| < | < | ||
| Line 22: | Line 26: | ||
| OPTION sol se | OPTION sol se | ||
| </ | </ | ||
| - | Store solutions and s.e. | + | Store solutions and standard errors. |
| + | < | ||
| + | OPTION store_pev_pec 6 | ||
| + | </ | ||
| + | Store triangular matrices of standard errors and its covariances for correlated random effects such as direct-maternal effects and random-regression effects in " | ||
| < | < | ||
| OPTION missing -999 | OPTION missing -999 | ||
| </ | </ | ||
| - | Missing observation | + | Specify missing observations |
| < | < | ||
| OPTION residual | OPTION residual | ||
| </ | </ | ||
| - | y-hat and residual will be shown in yhat_residual. | + | y-hat and residual will be included |
| < | < | ||
| OPTION blksize 3 | OPTION blksize 3 | ||
| </ | </ | ||
| Set block size for preconditioner (default 1). | Set block size for preconditioner (default 1). | ||
| + | < | ||
| + | OPTION prior_solutions | ||
| + | </ | ||
| + | Using the previous solution file to start the iteration. An additional software is required to use this option. | ||
| + | < | ||
| + | OPTION stdresidual | ||
| + | </ | ||
| + | y-hat and student residuals will be included in " | ||
| + | < | ||
| + | OPTION check_levels 0 | ||
| + | </ | ||
| + | Check levels (default 1 = true). | ||
| + | < | ||
| + | OPTION use_yams | ||
| + | </ | ||
| + | Run the program with YAMS (modified FSPAK). | ||
| < | < | ||
| OPTION SNP_file snp | OPTION SNP_file snp | ||
readme.blupf90.txt · Last modified: 2024/05/15 19:00 by dani