readme.blupf90
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readme.blupf90 [2012/05/30 00:54] – ignacio | readme.blupf90 [2014/04/25 17:18] – shogo | ||
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====== BLUPF90 ====== | ====== BLUPF90 ====== | ||
- | The documentation for blupf90 is available separately as a PDF document | + | ===== Summary ===== |
+ | The documentation for blupf90 is available separately as a {{: | ||
+ | \\ | ||
+ | See PREGSF90 with genotypes (SNP) for options. | ||
===== Options ===== | ===== Options ===== | ||
< | < | ||
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OPTION missing -999 | OPTION missing -999 | ||
</ | </ | ||
- | Missing observation | + | Specify missing observations |
< | < | ||
OPTION residual | OPTION residual | ||
</ | </ | ||
- | y-hat and residual will be shown in yhat_residual. | + | y-hat and residual will be included |
< | < | ||
OPTION blksize 3 | OPTION blksize 3 | ||
</ | </ | ||
Set block size for preconditioner (default 1). | Set block size for preconditioner (default 1). | ||
+ | < | ||
+ | OPTION prior_solutions | ||
+ | </ | ||
+ | Using the previous solution file to start the iteration. An additional software is required to use this option. | ||
+ | < | ||
+ | OPTION stdresidual | ||
+ | </ | ||
+ | y-hat and student residuals will be included in " | ||
+ | < | ||
+ | OPTION check_levels 0 | ||
+ | </ | ||
+ | Check levels (default 1 = true). | ||
+ | < | ||
+ | OPTION use_yams | ||
+ | </ | ||
+ | Run the program with YAMS (modified FSPAK). | ||
< | < | ||
OPTION SNP_file snp | OPTION SNP_file snp | ||
</ | </ | ||
Specify the SNP file name to use genotype data. | Specify the SNP file name to use genotype data. | ||
+ |
readme.blupf90.txt · Last modified: 2024/05/15 19:00 by dani