readme.blupf90
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readme.blupf90 [2012/05/30 14:16] – shogo | readme.blupf90 [2016/10/21 22:16] – [Options] shogo | ||
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====== BLUPF90 ====== | ====== BLUPF90 ====== | ||
+ | ===== Summary ===== | ||
The documentation for blupf90 is available separately as a {{: | The documentation for blupf90 is available separately as a {{: | ||
+ | \\ | ||
+ | See PREGSF90 with genotypes (SNP) for options. | ||
+ | |||
===== Options ===== | ===== Options ===== | ||
< | < | ||
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OPTION sol se | OPTION sol se | ||
</ | </ | ||
- | Store solutions and s.e. | + | Store solutions and standard errors. |
+ | < | ||
+ | OPTION store_pev_pec 6 | ||
+ | </ | ||
+ | Store triangular matrices of standard errors and its covariances for correlated random effects such as direct-maternal effects and random-regression effects in " | ||
< | < | ||
OPTION missing -999 | OPTION missing -999 | ||
</ | </ | ||
- | Missing observation | + | Specify missing observations |
< | < | ||
OPTION residual | OPTION residual | ||
</ | </ | ||
- | y-hat and residual will be shown in yhat_residual. | + | y-hat and residual will be included |
< | < | ||
OPTION blksize 3 | OPTION blksize 3 | ||
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</ | </ | ||
Check levels (default 1 = true). | Check levels (default 1 = true). | ||
+ | < | ||
+ | OPTION use_yams | ||
+ | </ | ||
+ | Run the program with YAMS (modified FSPAK). | ||
< | < | ||
OPTION SNP_file snp | OPTION SNP_file snp |
readme.blupf90.txt · Last modified: 2024/05/15 19:00 by dani