readme.blupf90
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| readme.blupf90 [2018/05/18 16:02] – [Options] dani | readme.blupf90 [2024/05/15 18:58] – dani | ||
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| OPTION conv_crit 1e-12 | OPTION conv_crit 1e-12 | ||
| </ | </ | ||
| - | Set convergence criteria (deault | + | Set convergence criteria (default |
| < | < | ||
| OPTION maxrounds 10000 | OPTION maxrounds 10000 | ||
| Line 34: | Line 34: | ||
| OPTION missing -999 | OPTION missing -999 | ||
| </ | </ | ||
| - | Specify missing observations (default 0) in integer. | + | Specify missing observations |
| < | < | ||
| OPTION residual | OPTION residual | ||
| Line 42: | Line 42: | ||
| OPTION blksize 3 | OPTION blksize 3 | ||
| </ | </ | ||
| - | Set block size for preconditioner (default 1). | + | Set a block size for preconditioner (default 1) to accelerate convergence (usually 2 to 5 times faster). For a multi-trait model, use the number of traits. This option is extremely important to ensure convergence in multi-trait models. |
| < | < | ||
| OPTION prior_solutions | OPTION prior_solutions | ||
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| Specify the SNP file name to use genotype data. | Specify the SNP file name to use genotype data. | ||
| + | < | ||
| + | OPTION snp_p_value | ||
| + | </ | ||
| + | Computes the elements of the inverse of the Mixed Model Equations that are needed for exact GWAS with p-values using postGSf90. This requires quite a lot of memory and time. For details see https:// | ||
| ==== Omit A-inverse ==== | ==== Omit A-inverse ==== | ||
readme.blupf90.txt · Last modified: 2024/05/15 19:00 by dani