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--- readme.blupf90new [2022/05/06 01:41] – dani
+++ readme.blupf90new [2022/05/06 01:43] – dani
@@ Line 133: / Line 133: @@
 <file>OPTION out_se_covar_function</file>
 Indicate to store in file samples of (co)variances function for postprocessing (histogram, etc.)
+==== Storing accuracy based on PEV ====
+  OPTION store_accuracy eff
+Stores reliabilities based on PEV, where //eff// is the number of the animal effect.\\
+By default, it uses inbreeding (F) in the denominator of the reliability formula: reliability = 1-PEV/($\sigma\mathbf{}_{u}^{2}$(1 + F)) [[https://doi.org/10.1111/jbg.12470|Aguilar et al. (2020)]].\\
+It uses inbreeding based on $\mathbf{A}$ or $\mathbf{H}$ from the direct inversion of $\mathbf{A}^{-1}$ or $\mathbf{H}^{-1}$, whichever is being used.    \\
+  OPTION type 1.0
+Select 1.0 for dairy cattle (Reliability) or 0.5 for beef cattle (BIF accuracy) (default 1.0).
+  OPTION correct_accuracy_by_inbreeding filaname
+//filename// is the name of the inbreeding file if other than renf90.inb
+  OPTION correct_accuracy_by_inbreeding_direct 0
+This option turns off the the inbreeding correction in the reliability formula.
 ==== Omit A-inverse ====
@@ Line 192: / Line 209: @@
 The new option removes $\mathbf{A}^{-1}$ from the equations so GBLUP will be easily performed.
-==== Storing accuracy based on PEV ====
-  OPTION store_accuracy eff
-Stores reliabilities based on PEV, where //eff// is the number of the animal effect.\\
-By default, it uses inbreeding (F) in the denominator of the reliability formula: reliability = 1-PEV/($\sigma\mathbf{}_{u}^{2}$(1 + F)) [[https://doi.org/10.1111/jbg.12470|Aguilar et al. (2020)]].\\
-It uses inbreeding based on $\mathbf{A}$ or $\mathbf{H}$ from the direct inversion of $\mathbf{A}^{-1}$ or $\mathbf{H}^{-1}$, whichever is being used.    \\
-  OPTION type 1.0
-Select 1.0 for dairy cattle (Reliability) or 0.5 for beef cattle (BIF accuracy) (default 1.0).
-  OPTION correct_accuracy_by_inbreeding filaname
-//filename// is the name of the inbreeding file if other than renf90.inb
-  OPTION correct_accuracy_by_inbreeding_direct 0
-This option turns off the the inbreeding correction in the reliability formula.
 ===== Tricks =====