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--- readme.gibbs1 [2013/07/17 16:28] – shogo
+++ readme.gibbs1 [2018/04/12 20:28] – [Running] shogo
@@ Line 7: / Line 7: @@
 ===== Running =====
+You can run as
+<file>gibbs1f90 parameter_file --rounds 1000000 --burnin 10000 - -thin 10 --thinprint 10 </file>
+in which case you give the number of rounds, the burn-in, the storage of samples in the file ''gibbs_samples'', and the interval between printouts in the screen. Otherwise you can simply type ''gibbs1f90'' and you will be asked the parameter file and the questions below:
 number of samples and length of burn-in?
@@ Line 28: / Line 35: @@
 OPTION solution all 1 2 3
 </file>
+Caution: this option will create a huge output solution file when you run many rounds and/or use a large model.
 All solutions and posterior means and SD for effects1, 2, and 3 are stored in "all_solutions" and in "final_solutions" every round. Without numbers, all solutions for all effects are stored.
 <file>
 OPTION solution mean 1 2 3
 </file>
+Caution: this option will create a huge output solution file when you run many rounds and/or use a large model.
 Posterior means and SD for effects1, 2, and 3 in "final_solutions".
 <file>
@@ Line 53: / Line 62: @@
 </file>
 Specify the SNP file name to use genotype data.