readme.gibbs2
Differences
This shows you the differences between two versions of the page.
Both sides previous revisionPrevious revisionNext revision | Previous revisionNext revisionBoth sides next revision | ||
readme.gibbs2 [2012/05/29 17:16] – shogo | readme.gibbs2 [2012/08/17 15:09] – [Running] ignacio | ||
---|---|---|---|
Line 1: | Line 1: | ||
====== GIBBS2F90 ====== | ====== GIBBS2F90 ====== | ||
\\ | \\ | ||
- | Ignacy Misztal, University of Georgia | + | Ignacy Misztal, University of Georgia, 3/7/2001 |
- | 3/7/2001 | + | |
===== Summary ===== | ===== Summary ===== | ||
Line 39: | Line 38: | ||
10000 is the number of samples run previously when restarting the program from the last run. | 10000 is the number of samples run previously when restarting the program from the last run. | ||
< | < | ||
- | OPTION | + | OPTION |
</ | </ | ||
- | 5 is the degree of belief for the priors specified in the parameter file. | + | The (co)variance |
+ | Degree of belief for all random effects should be specified using the following structure: | ||
+ | OPTION prior eff1 db1 eff2 db2 ... effn dbn -1 dbres\\ | ||
+ | effx correspond to the effect number and dbx to the degree of belief for this random effect, -1 corresponds to the degree of belief of the residual variance.\\ | ||
+ | In this example 2 is the degree of belief for the 5th effect, and 5 is the degree of belief for the residual.\\ | ||
< | < | ||
OPTION seed 123 321 | OPTION seed 123 321 | ||
Line 50: | Line 53: | ||
</ | </ | ||
Specify the SNP file name to use genotype data. | Specify the SNP file name to use genotype data. | ||
- |
readme.gibbs2.txt · Last modified: 2024/03/25 18:22 by 127.0.0.1