readme.gibbs2
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readme.gibbs2 [2012/05/30 14:20] – shogo | readme.gibbs2 [2012/08/17 15:06] – [Running] ignacio | ||
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10000 is the number of samples run previously when restarting the program from the last run. | 10000 is the number of samples run previously when restarting the program from the last run. | ||
< | < | ||
- | OPTION prior 5 | + | OPTION prior 5 2 -1 5 |
</ | </ | ||
- | 5 is the degree of belief for the priors specified in the parameter file. | + | 2 is the degree of belief for the 5th effect, and 5 is the degree of belief for the residual.\\ |
+ | The (co)variance | ||
+ | Degree of belief for all random effects should be specified using the following structure: | ||
+ | OPTION prior eff1 db1 eff2 db2 ... effn dbn -1 dbres' | ||
+ | effx correspond to the effect number and dbx to the degree of belief for this random effect.\\ | ||
+ | -1 correspond to the degree of belief of the residual variance. | ||
< | < | ||
OPTION seed 123 321 | OPTION seed 123 321 | ||
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</ | </ | ||
Specify the SNP file name to use genotype data. | Specify the SNP file name to use genotype data. | ||
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readme.gibbs2.txt · Last modified: 2024/03/25 18:22 by 127.0.0.1