readme.gibbs2
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| readme.gibbs2 [2012/05/30 14:20] – shogo | readme.gibbs2 [2012/08/17 15:09] – [Running] ignacio | ||
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| 10000 is the number of samples run previously when restarting the program from the last run. | 10000 is the number of samples run previously when restarting the program from the last run. | ||
| < | < | ||
| - | OPTION prior 5 | + | OPTION prior 5 2 -1 5 |
| </ | </ | ||
| - | 5 is the degree of belief for the priors specified in the parameter file. | + | The (co)variance |
| + | Degree of belief for all random effects should be specified using the following structure: | ||
| + | OPTION prior eff1 db1 eff2 db2 ... effn dbn -1 dbres\\ | ||
| + | effx correspond to the effect number and dbx to the degree of belief for this random effect, -1 corresponds to the degree of belief of the residual variance.\\ | ||
| + | In this example 2 is the degree of belief for the 5th effect, and 5 is the degree of belief for the residual.\\ | ||
| < | < | ||
| OPTION seed 123 321 | OPTION seed 123 321 | ||
| Line 49: | Line 53: | ||
| </ | </ | ||
| Specify the SNP file name to use genotype data. | Specify the SNP file name to use genotype data. | ||
| - | |||
readme.gibbs2.txt · Last modified: 2024/03/25 18:22 by 127.0.0.1