readme.illumina2pregs
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readme.illumina2pregs [2014/05/26 09:48] – created ignacio | readme.illumina2pregs [2014/05/26 09:54] – [Usage] ignacio | ||
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- | =====illumina2pregs===== | + | ====== Illumina2preGS ====== |
- | - a program to convert genomic information | + | A program to convert genomic information from Illumina files for the BLUPF90 family of programs\\ |
- | from Illumina files for the BLUPF90 family of programs | + | |
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======Summary====== | ======Summary====== | ||
- | Tool for converts FinalReport files from Genome Studio into file suitable for reading with pregsf90 | + | Tool for converts FinalReport files from Genome Studio into file suitable for reading with '' |
Read only AB codes and generates integer variable 0,1,2 or 5 for missing | Read only AB codes and generates integer variable 0,1,2 or 5 for missing | ||
- | ======USAGE====== | + | ======Usage====== |
- | | + | |
+ | < | ||
- | | + | The only mandatory argument that is required is the '' |
other options can be modified with optional arguments: | other options can be modified with optional arguments: | ||
Optional Arguments | Optional Arguments | ||
- | --mapfile | + | |
- | --genome | + | |
- | --nosortmap | + | |
- | --codeab | + | |
- | --gc <n thr> | + | |
- | --alphasize | + | |
- | --snpfile_out | + | |
readme.illumina2pregs.txt · Last modified: 2024/03/25 18:22 by 127.0.0.1