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readme.illumina2pregs [2014/05/26 09:58] – [File formats] ignacioreadme.illumina2pregs [2014/05/26 10:00] – [Input files] ignacio
Line 40: Line 40:
 =====File formats===== =====File formats=====
  
-Input files +====Input files==== 
------------ +''SNP_Map.txt''
-SNP_Map.txt:+
    1 Index                                                 1 Index                                             
    2 Name                                                  2 Name                                              
Line 56: Line 55:
   12 NormID   12 NormID
  
-FinalReport.txt:+''FinalReport.txt'' 
 ** this is the default but use ''--codeab'' argument for change it ** this is the default but use ''--codeab'' argument for change it
    1 SNP_Name    1 SNP_Name
Line 70: Line 70:
   11 Y   11 Y
  
-Output files: +====Output files==== 
--------------+
  
-snps2pregs:+''snps2pregs''
    1  ID (alphnumeric identification of lenght "alphasize", default 10)    1  ID (alphnumeric identification of lenght "alphasize", default 10)
    2  one space    2  one space
    3  genotypes: 0, 1, 2, for AA, AB and BB respectively and 5 for missing.    3  genotypes: 0, 1, 2, for AA, AB and BB respectively and 5 for missing.
  
-snp_map:+''snp_map''
    1 index    1 index
    2 chromosome    2 chromosome
readme.illumina2pregs.txt · Last modified: 2024/03/25 18:22 by 127.0.0.1
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