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readme.illumina2pregs [2014/05/26 10:07] – [Summary] ignacioreadme.illumina2pregs [2014/06/11 13:45] – [Optional Arguments] dani
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 ======Usage====== ======Usage======
  
-<file>illumina2pregs --snpfile <yourSnpFinalReportFilename> </file>+<file>illumina2preGS --snpfile <yourSnpFinalReportFilename> </file>
  
 The only mandatory argument that is required is the ''--snpfile'' The only mandatory argument that is required is the ''--snpfile''
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  Set column number (n) of GC and the cutoff (thr) for exclude call (default from GenomeStudio 0.15)   Set column number (n) of GC and the cutoff (thr) for exclude call (default from GenomeStudio 0.15) 
 <file>--alphasize</file> <file>--alphasize</file>
- Set the maximun length to store alphnumeric IDs (default 10)+ Set the maximun length to store alphanumeric IDs (default 10)
 <file>--snpfile_out</file> <file>--snpfile_out</file>
  Set a file name for output SNP file (default snps2pregs)  Set a file name for output SNP file (default snps2pregs)
readme.illumina2pregs.txt · Last modified: 2024/03/25 18:22 by 127.0.0.1

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