Differences

This shows you the differences between two versions of the page.

--- readme.illumina2pregs [2014/05/26 10:07] – [Summary] ignacio
+++ readme.illumina2pregs [2017/03/16 18:58] – [Summary] dani
@@ Line 10: / Line 10: @@
 ======Summary======
-Tool for converts ''FinalReport'' and ''SNP_Map.txt'' files from Genome Studio into files suitables for reading with ''pregsf90''
+Tool for converting ''FinalReport'' and ''SNP_Map.txt'' files from Genome Studio into files suitables for reading with ''pregsf90''
 Reads only AB codes and generates integer variable 0,1,2  or 5 for missing
@@ Line 16: / Line 16: @@
 ======Usage======
-<file>illumina2pregs --snpfile <yourSnpFinalReportFilename> </file>
+<file>illumina2preGS --snpfile <yourSnpFinalReportFilename> </file>
 The only mandatory argument that is required is the ''--snpfile''
@@ Line 34: / Line 34: @@
  Set column number (n) of GC and the cutoff (thr) for exclude call (default from GenomeStudio 0.15)
 <file>--alphasize</file>
- Set the maximun length to store alphnumeric IDs (default 10)
+ Set the maximun length to store alphanumeric IDs (default 10)
 <file>--snpfile_out</file>
  Set a file name for output SNP file (default snps2pregs)