readme.illumina2pregs
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readme.illumina2pregs [2014/05/26 10:07] – [Summary] ignacio | readme.illumina2pregs [2019/09/27 00:11] – [Optional Arguments] ignacio | ||
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======Summary====== | ======Summary====== | ||
- | Tool for converts | + | Tool for converting |
Reads only AB codes and generates integer variable 0,1,2 or 5 for missing | Reads only AB codes and generates integer variable 0,1,2 or 5 for missing | ||
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======Usage====== | ======Usage====== | ||
- | < | + | < |
The only mandatory argument that is required is the '' | The only mandatory argument that is required is the '' | ||
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< | < | ||
| | ||
- | < | + | < |
- | | + | Set GC cutoff (thr) for exclude call (default from GenomeStudio 0.15) |
- | < | + | |
- | | + | |
< | < | ||
- | Set the maximun length to store alphnumeric | + | Set the maximun length to store alphanumeric |
< | < | ||
Set a file name for output SNP file (default snps2pregs) | Set a file name for output SNP file (default snps2pregs) | ||
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5 index in original SNP_Map.txt | 5 index in original SNP_Map.txt | ||
+ | SNP without defined position (CHR = 0) in the SNP_Map.txt will be located in a new CHR 32 in the output snp_map, but still with 0 position. |
readme.illumina2pregs.txt · Last modified: 2024/03/25 18:22 by 127.0.0.1