readme.pcg2
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readme.pcg2 [2012/05/28 14:37] – shogo | readme.pcg2 [2012/05/29 16:02] – shogo | ||
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+ | ====== BLUP90IOD2====== | ||
+ | \\ | ||
+ | The original program was written by Shogo Tsuruta in 1999. | ||
- | Available options: | + | ===== Summary===== |
+ | BLUP90IOD2 is a BLUP program for solving a large number of mixed model equations, using preconditioned conjugate gradient (PCG). | ||
+ | ====== Options ====== | ||
+ | < | ||
OPTION conv_crit 1e-12 | OPTION conv_crit 1e-12 | ||
- | + | </ | |
- | | + | set convergence criteria (deault 1e-12). |
+ | < | ||
OPTION maxrounds 10000 | OPTION maxrounds 10000 | ||
- | + | </ | |
- | | + | set maximum number of rounds (default 1000). |
+ | < | ||
OPTION blksize 3 | OPTION blksize 3 | ||
- | + | </ | |
- | | + | set block size for preconditioner (default 1). |
+ | < | ||
OPTION init_eq 10 | OPTION init_eq 10 | ||
- | set the number of effects to be solved directly (default=0) | + | </ |
+ | set the number of effects to be solved directly (default=0) | ||
+ | < | ||
OPTION cont 1 | OPTION cont 1 | ||
- | to restart the program from the previous solutions | + | </ |
+ | to restart the program from the previous solutions | ||
+ | < | ||
OPTION missing -1 | OPTION missing -1 | ||
- | set the missing value (default 0). | + | </ |
+ | set the missing value (default 0). | ||
+ | < | ||
OPTION restart 100 | OPTION restart 100 | ||
- | set the number of iteration to recompute residuals (default=100) | + | </ |
+ | set the number of iteration to recompute residuals (default=100) | ||
+ | < | ||
OPTION SNP_file snps | OPTION SNP_file snps | ||
- | implement one-step genomic selection updating animal effects with genomic relationship matrix (H-Inverse) | + | </ |
+ | implement one-step genomic selection updating animal effects with genomic relationship matrix (H-Inverse) | ||
- | For information on availability of BLUP90IOD, please contact Ignacy | + | //For information on availability of BLUP90IOD, please contact Ignacy Misztal (ignacy@uga.edu) at the University of Georgia.// |
- | Misztal (ignacy@uga.edu) at the University of Georgia. | + | |
readme.pcg2.txt · Last modified: 2024/05/16 14:16 by dani