readme.renumf90
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| Both sides previous revisionPrevious revisionNext revision | Previous revisionNext revisionBoth sides next revision | ||
| readme.renumf90 [2012/05/29 11:50] – ignacio | readme.renumf90 [2012/05/29 12:07] – [Structure of parameter file] ignacio | ||
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| Line 25: | Line 25: | ||
| The parameter file contains keywords in capital followed by specifications | The parameter file contains keywords in capital followed by specifications | ||
| - | of a given effect/data item. The keywords need to be typed exactly. Specific | + | of a given effect/data item.\\ The keywords need to be typed exactly.\\ Specific |
| keywords need to occur sequentially, | keywords need to occur sequentially, | ||
| Line 303: | Line 303: | ||
| =====Example====== | =====Example====== | ||
| + | |||
| + | |||
| + | **__data file__** - '' | ||
| < | < | ||
| - | data file - data.test | ||
| - | --------------------- | ||
| 1 aa 34.5 11 12 zz | 1 aa 34.5 11 12 zz | ||
| 3 bb 21.333 22 23 xx | 3 bb 21.333 22 23 xx | ||
| Line 315: | Line 316: | ||
| </ | </ | ||
| + | |||
| + | **__pedigree file__** - '' | ||
| < | < | ||
| - | pedigree file - test.ped | ||
| - | ------------------------ | ||
| qq 0 0 | qq 0 0 | ||
| aa 0 0 | aa 0 0 | ||
| Line 325: | Line 326: | ||
| </ | </ | ||
| - | </ | + | |
| - | parameter file - testpar1 | + | **__parameter file__** |
| - | ------------------------- | + | < |
| # Parameter file for program renf90; it is translated to parameter | # Parameter file for program renf90; it is translated to parameter | ||
| # file for BLUPF90 family f programs. | # file for BLUPF90 family f programs. | ||
| Line 372: | Line 373: | ||
| </ | </ | ||
| - | </ | + | **__printout__** \\ |
| - | printout | + | \\ |
| - | ------------------------------------------------------ | + | (temporary; the amount of details may change) |
| + | < | ||
| | | ||
| name of parameter file? testpar1 | name of parameter file? testpar1 | ||
| Line 465: | Line 467: | ||
| </ | </ | ||
| + | **__new parameter file__** - '' | ||
| < | < | ||
| - | new parameter file - renf90.par | ||
| - | ------------------------------- | ||
| # BLUPF90 parameter file created by RENF90 | # BLUPF90 parameter file created by RENF90 | ||
| DATAFILE | DATAFILE | ||
| Line 531: | Line 532: | ||
| + | |||
| + | **__data file__** - '' | ||
| < | < | ||
| - | data file - renf90.dat | ||
| - | ---------------------- | ||
| 34.5 11 1 3 5 12 1 3 aa 1 | 34.5 11 1 3 5 12 1 3 aa 1 | ||
| | | ||
| Line 542: | Line 543: | ||
| </ | </ | ||
| + | |||
| + | **__Pedigree file__** - '' | ||
| < | < | ||
| - | | ||
| - | | ||
| 1 6 3 1 0 2 2 0 0 bb | 1 6 3 1 0 2 2 0 0 bb | ||
| 6 0 0 1 0 0 0 2 0 qq | 6 0 0 1 0 0 0 2 0 qq | ||
| Line 554: | Line 555: | ||
| </ | </ | ||
| + | **'' | ||
| < | < | ||
| - | renumbering tables - renf90.tables | ||
| - | ---------------------------------- | ||
| | | ||
| | | ||
readme.renumf90.txt · Last modified: 2024/05/22 18:53 by dani