Differences

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--- readme.renumf90 [2012/05/29 12:18] – [Fields in the parameter file] ignacio
+++ readme.renumf90 [2012/05/29 12:19] – [Fields in the parameter file] ignacio
@@ Line 173: / Line 173: @@
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 optional\\
-  * if t is 'yob', the assignment is based on year of birth; the
+  * if t is 'yob', the assignment is based on year of birth; the subsequent line should contain list of years to separate different UPG;
-subsequent line should contain list of years to separate different UPG;
-  * if t is 'in_pedigrees', the value of a missing parent should be -x, where x is
+  * if t is 'in_pedigrees', the value of a missing parent should be -x, where x is UPG number that this missing parent should be allocated to; in this option, all known parents should have pedigree lines, i.e., each parent field should contain either the ID of a real parent, or a negative UPG number.
-UPG number that this missing parent should be allocated to; in this option,
-all known parents should have pedigree lines, i.e., each parent field should
-contain either the ID of a real parent, or a negative UPG number.
-  * if t is 'internal',  allocation is by a user-written function
+  * if t is 'internal',  allocation is by a user-written function custom_upg(year_of_birth,sex,ID, parent_code).
-custom_upg(year_of_birth,sex,ID, parent_code).
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