Differences

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--- readme.renumf90 [2012/05/29 12:18] – [Fields in the parameter file] ignacio
+++ readme.renumf90 [2012/05/29 12:24] – [OPTIONS] ignacio
@@ Line 173: / Line 173: @@
 </file>
 optional\\
-  * if t is 'yob', the assignment is based on year of birth; the
+  * if t is 'yob', the assignment is based on year of birth; the subsequent line should contain list of years to separate different UPG;
-subsequent line should contain list of years to separate different UPG;
-  * if t is 'in_pedigrees', the value of a missing parent should be -x, where x is
+  * if t is 'in_pedigrees', the value of a missing parent should be -x, where x is UPG number that this missing parent should be allocated to; in this option, all known parents should have pedigree lines, i.e., each parent field should contain either the ID of a real parent, or a negative UPG number.
-UPG number that this missing parent should be allocated to; in this option,
-all known parents should have pedigree lines, i.e., each parent field should
-contain either the ID of a real parent, or a negative UPG number.
-  * if t is 'internal',  allocation is by a user-written function
+  * if t is 'internal',  allocation is by a user-written function custom_upg(year_of_birth,sex,ID, parent_code).
-custom_upg(year_of_birth,sex,ID, parent_code).
 <file>
@@ Line 224: / Line 219: @@
-----
+=====Extra comments=====
 Sections starting from EFFECTS can be repeated any number of types.\\
@@ Line 235: / Line 230: @@
 The sequence of keywords should be as above although optional fields can be
-skipped. Keywords out of order may not be recognized.
+skipped.
-=====OPTIONS=====
+Keywords out of order may not be recognized.
+=====Options=====
 The following options can added at the end of the parameter file to redefine
-parameter used to read the input file:
+parameters used to read the input file:
  - the default size of character fields
@@ Line 245: / Line 242: @@
 	OPTION alpha size nn
 </file>
-   where nn is the new size.
+where //nn// is the new size.
  - the size of th record length
@@ Line 251: / Line 248: @@
 	OPTION max_string_readline nn
 </file>
-   where nn is the new size.
+where //nn// is the new size.
  - the maximun number of fields
@@ Line 257: / Line 254: @@
         OPTION max_field_readline nn
 </file>
-   where nn is the number of fields.
+where //nn// is the number of fields.