readme.renumf90
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readme.renumf90 [2012/05/29 12:35] – [Fields in the parameter file] ignacio | readme.renumf90 [2012/11/18 21:43] – ignacio | ||
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=======RENUMF90====== | =======RENUMF90====== | ||
- | renumbering program for the BLUPF90 family now works with SNP info\\ | + | A renumbering program for the '' |
Ignacy Misztal and Ignacio Aguilar, University of Georgia\\ | Ignacy Misztal and Ignacio Aguilar, University of Georgia\\ | ||
August 27, 2001 - Mar 17, 2011 | August 27, 2001 - Mar 17, 2011 | ||
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Lines with # are treated as comments | Lines with # are treated as comments | ||
| | ||
- | < | + | < |
DATAFILE | DATAFILE | ||
f1 | f1 | ||
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The data file is f1 | The data file is f1 | ||
- | < | + | < |
TRAITS | TRAITS | ||
t1 t2 .. tn | t1 t2 .. tn | ||
Line 101: | Line 101: | ||
rtype is: | rtype is: | ||
* ' | * ' | ||
- | * ' | + | * ' |
* ' | * ' | ||
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* ' | * ' | ||
* ' | * ' | ||
- | * ' | + | * ' |
< | < | ||
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* if t is ' | * if t is ' | ||
- | * if t is ' | + | * if t is ' |
< | < | ||
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- the default size of character fields | - the default size of character fields | ||
< | < | ||
- | OPTION alpha size nn | + | OPTION alpha size nn |
</ | </ | ||
where //nn// is the new size. | where //nn// is the new size. | ||
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- the size of th record length | - the size of th record length | ||
< | < | ||
- | OPTION max_string_readline nn | + | OPTION max_string_readline nn |
</ | </ | ||
where //nn// is the new size. | where //nn// is the new size. | ||
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- the maximun number of fields | - the maximun number of fields | ||
< | < | ||
- | | + | OPTION max_field_readline nn |
</ | </ | ||
where //nn// is the number of fields. | where //nn// is the number of fields. | ||
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4) 3 minus number of known parents | 4) 3 minus number of known parents | ||
5) known or estimated year of birth (0 if not provided) | 5) known or estimated year of birth (0 if not provided) | ||
- | 6) number of known parents (parents might be eliminated if not | + | 6) number of known parents (parents might be eliminated if not contributing; |
- | | + | |
7) number of records | 7) number of records | ||
- | 8) number of progenies (before elimination due to other effects) | + | 8) number of progenies (before elimination due to other effects) as parent 1 |
- | | + | 9) number of progenies (before elimination due to other effects) as parent 2 |
- | 9) number of progenies (before elimination due to other effects) | + | |
- | | + | |
10) original animal id | 10) original animal id | ||
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< | < | ||
# Parameter file for program renf90; it is translated to parameter | # Parameter file for program renf90; it is translated to parameter | ||
- | # file for BLUPF90 family | + | # file for BLUPF90 family programs. |
DATAFILE | DATAFILE | ||
data.test | data.test |
readme.renumf90.txt · Last modified: 2024/05/22 18:53 by dani