readme.renumf90
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| readme.renumf90 [2012/05/29 12:35] – [Fields in the parameter file] ignacio | readme.renumf90 [2013/12/09 18:14] – shogo | ||
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| =======RENUMF90====== | =======RENUMF90====== | ||
| - | renumbering program for the BLUPF90 family now works with SNP info\\ | + | A renumbering program for the '' |
| Ignacy Misztal and Ignacio Aguilar, University of Georgia\\ | Ignacy Misztal and Ignacio Aguilar, University of Georgia\\ | ||
| August 27, 2001 - Mar 17, 2011 | August 27, 2001 - Mar 17, 2011 | ||
| Line 42: | Line 42: | ||
| Lines with # are treated as comments | Lines with # are treated as comments | ||
| | | ||
| - | < | + | < |
| DATAFILE | DATAFILE | ||
| f1 | f1 | ||
| Line 48: | Line 48: | ||
| The data file is f1 | The data file is f1 | ||
| - | < | + | < |
| TRAITS | TRAITS | ||
| t1 t2 .. tn | t1 t2 .. tn | ||
| Line 101: | Line 101: | ||
| rtype is: | rtype is: | ||
| * ' | * ' | ||
| - | * ' | + | * ' |
| * ' | * ' | ||
| Line 113: | Line 113: | ||
| * ' | * ' | ||
| * ' | * ' | ||
| - | * ' | + | * ' |
| < | < | ||
| Line 204: | Line 204: | ||
| * if t is ' | * if t is ' | ||
| - | * if t is ' | + | * if t is ' |
| < | < | ||
| Line 211: | Line 211: | ||
| </ | </ | ||
| Specifies that random regressions should be applied to the animal and | Specifies that random regressions should be applied to the animal and | ||
| - | corresponding effects (mat, pe and mpe) | + | corresponding |
| this keyword also could be applied to set covariables for fixed effects; | this keyword also could be applied to set covariables for fixed effects; | ||
| Line 272: | Line 272: | ||
| - the default size of character fields | - the default size of character fields | ||
| < | < | ||
| - | OPTION | + | OPTION |
| </ | </ | ||
| where //nn// is the new size. | where //nn// is the new size. | ||
| Line 278: | Line 278: | ||
| - the size of th record length | - the size of th record length | ||
| < | < | ||
| - | OPTION max_string_readline nn | + | OPTION max_string_readline nn |
| </ | </ | ||
| where //nn// is the new size. | where //nn// is the new size. | ||
| Line 284: | Line 284: | ||
| - the maximun number of fields | - the maximun number of fields | ||
| < | < | ||
| - | | + | OPTION max_field_readline nn |
| </ | </ | ||
| where //nn// is the number of fields. | where //nn// is the number of fields. | ||
| Line 327: | Line 327: | ||
| 4) 3 minus number of known parents | 4) 3 minus number of known parents | ||
| 5) known or estimated year of birth (0 if not provided) | 5) known or estimated year of birth (0 if not provided) | ||
| - | 6) number of known parents (parents might be eliminated if not | + | 6) number of known parents (parents might be eliminated if not contributing; |
| - | | + | |
| 7) number of records | 7) number of records | ||
| - | 8) number of progenies (before elimination due to other effects) | + | 8) number of progenies (before elimination due to other effects) as parent 1 |
| - | | + | 9) number of progenies (before elimination due to other effects) as parent 2 |
| - | 9) number of progenies (before elimination due to other effects) | + | |
| - | | + | |
| 10) original animal id | 10) original animal id | ||
| Line 372: | Line 370: | ||
| < | < | ||
| # Parameter file for program renf90; it is translated to parameter | # Parameter file for program renf90; it is translated to parameter | ||
| - | # file for BLUPF90 family | + | # file for BLUPF90 family programs. |
| DATAFILE | DATAFILE | ||
| data.test | data.test | ||
readme.renumf90.txt · Last modified: 2024/05/22 18:53 by dani