Differences

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--- readme.renumf90 [2012/05/29 12:38] – [RENUMF90] ignacio
+++ readme.renumf90 [2013/12/09 18:14] – shogo
@@ Line 42: / Line 42: @@
 Lines with # are treated as comments
 <file>
 DATAFILE
 f1
@@ Line 48: / Line 48: @@
 The data file is f1
 <file>
 TRAITS
 t1 t2 .. tn
@@ Line 101: / Line 101: @@
 rtype is:
   * 'diagonal'
-  * 'sire'
+  * 'sire'; not yet implemented
   * 'animal'
@@ Line 113: / Line 113: @@
   * 'pe' for permanent environment
   * 'mat' for maternal
-  * 'mpe' for maternal permanent environment
+  * 'mpe' for maternal permanent environment; only if 'mat' is used
 <file>
@@ Line 204: / Line 204: @@
   * if t is 'in_pedigrees', the value of a missing parent should be -x, where x is UPG number that this missing parent should be allocated to; in this option, all known parents should have pedigree lines, i.e., each parent field should contain either the ID of a real parent, or a negative UPG number.
-  * if t is 'internal',  allocation is by a user-written function custom_upg(year_of_birth,sex,ID, parent_code).
+  * if t is 'internal',  allocation is by a user-written function custom_upg(year_of_birth,sex,ID, parent_code); not yet implemented.
 <file>
@@ Line 211: / Line 211: @@
 </file>
 Specifies that random regressions should be applied to the animal and
-corresponding effects (mat, pe and mpe)
+corresponding random effects (mat, pe and mpe) or the diagonal random effect.
 this keyword also could be applied to set covariables for fixed effects;
@@ Line 272: / Line 272: @@
  - the default size of character fields
 <file>
-OPTION alpha size nn
+OPTION alpha_size nn
 </file>
 where //nn// is the new size.
@@ Line 370: / Line 370: @@
 <file>
 # Parameter file for program renf90; it is translated to parameter
-# file for BLUPF90 family f programs.
+# file for BLUPF90 family programs.
 DATAFILE
 data.test