readme.renumf90
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readme.renumf90 [2012/11/18 21:43] – ignacio | readme.renumf90 [2016/11/04 21:17] – [Additive Pedigree File] shogo | ||
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for animal effect only; | for animal effect only; | ||
- | specifies positions in the pedigree file of animal an, sire s, dam d, alternate_dam | + | specifies positions in the pedigree file of animal |
missing alt_dam or yob can be replaced by 0 | missing alt_dam or yob can be replaced by 0 | ||
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* if t is ' | * if t is ' | ||
+ | < | ||
+ | INBREEDING | ||
+ | inb_type | ||
+ | </ | ||
+ | optional\\ | ||
+ | use of inbreeding coefficients to compute inb/upg code in the 4th column of the output pedigree file | ||
+ | |||
+ | // | ||
+ | * ' | ||
+ | * ' | ||
< | < | ||
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</ | </ | ||
Specifies that random regressions should be applied to the animal and | Specifies that random regressions should be applied to the animal and | ||
- | corresponding effects (mat, pe and mpe) | + | corresponding |
this keyword also could be applied to set covariables for fixed effects; | this keyword also could be applied to set covariables for fixed effects; | ||
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</ | </ | ||
//gmpe// are (co)variances for the MPE effect if present | //gmpe// are (co)variances for the MPE effect if present | ||
- | |||
- | |||
=====Extra comments===== | =====Extra comments===== | ||
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- the default size of character fields | - the default size of character fields | ||
< | < | ||
- | OPTION | + | OPTION |
</ | </ | ||
where //nn// is the new size. | where //nn// is the new size. | ||
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</ | </ | ||
catenates //b c// ... into //a//.\\ | catenates //b c// ... into //a//.\\ | ||
- | Keywords | + | Keyword |
There may be many combined fields. | There may be many combined fields. | ||
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if animal has genotype 10+number of know parents | if animal has genotype 10+number of know parents | ||
7) number of records | 7) number of records | ||
- | 8) number of progenies | + | 8) number of progeny |
- | 9) number of progenies | + | 9) number of progeny |
10) original animal id | 10) original animal id | ||
readme.renumf90.txt · Last modified: 2024/05/22 18:53 by dani