Differences

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--- readme.renumf90 [2014/05/06 16:42] – [Fields in the parameter file] ignacio
+++ readme.renumf90 [2016/10/13 21:58] – [Fields in the parameter file] ignacio
@@ Line 206: / Line 206: @@
   * if t is 'internal',  allocation is by a user-written function custom_upg(year_of_birth,sex,ID, parent_code); not yet implemented.
+<file>
+INBREEDING
+inb_type
+</file>
+optional\\
+use of inbreeding coefficients to compute inb/upg code in the 4th column of the output pedigree file
+  * if inb_type is 'pedigree', the program computes inbreeding coefficients with Meuwissen and Luo (1992) using the pedigree to be saved in renaddxx.ped; calculated inbreeding coefficients will be saved in a file "renf90.inb" with the original ID
+* if inb_type is 'file',the program reads inbreeding coefficients from an external file. You should put the filename after 'file' e.g. 'file inbreeding.txt'. The file has at least 2 columns: original_ID and inbreeding value (from 0.0 to 1.0). The program just skips unnecessary IDs
 <file>
 RANDOM_REGRESSION
@@ Line 249: / Line 256: @@
 </file>
 //gmpe// are (co)variances for the MPE effect if present
 =====Extra comments=====
@@ Line 301: / Line 306: @@
 </file>
 catenates //b c// ... into //a//.\\
-Keywords COMBINE need to be on top of the parameter file, but possibly after comments.
+Keyword COMBINE needs to be on top of the parameter file, but possibly after comments.
 There may be many combined fields.