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| Both sides previous revisionPrevious revision | Next revisionBoth sides next revision |
| readme.renumf90 [2022/08/08 17:56] – andres | readme.renumf90 [2022/09/13 19:43] – dani |
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| </file> | </file> |
| optional\\ | optional\\ |
| use of inbreeding coefficients to compute inb/upg code in the 4th column of the output pedigree file | use of inbreeding coefficients to compute inb/upg code in the 4th column of the output pedigree file. Inbreeding calculation is a default in RENUMF90 ≥ v1.157, even if this keyword is not used. |
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| //inb_type// could be: | //inb_type// could be: |
| * 'pedigree' - the program computes inbreeding coefficients with Meuwissen and Luo (1992) using the pedigree to be saved in renaddxx.ped; calculated inbreeding coefficients will be saved in a file "renf90.inb" with the original ID | * 'pedigree' - the program computes inbreeding coefficients with Meuwissen and Luo (1992) using the pedigree to be saved in renaddxx.ped; calculated inbreeding coefficients will be saved in a file "renf90.inb" with the original ID |
| * 'file' - the program reads inbreeding coefficients from an external file. You should put the filename after 'file' e.g. 'file inbreeding.txt'. The file has at least 2 columns: original_ID and inbreeding value (from 0.0 to 1.0). The program just skips unnecessary IDs | * 'file' - the program reads inbreeding coefficients from an external file. You should put the filename after 'file' e.g. 'file inbreeding.txt'. The file has at least 2 columns: original_ID and inbreeding value (from 0.0 to 1.0). The program just skips unnecessary IDs |
| | * 'self x' - Calculates inbreeding with selfing, where x is the column in the pedigree file with the number of selfing generation |
| | * 'no-inbreeding' - turn inbreeding calculation off in RENUMF90 ≥ v1.157 |
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| <file> | <file> |
