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readme.renumf90 [2022/09/13 19:43] – dani | readme.renumf90 [2023/03/02 00:47] – andres |
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<file> | <file> |
WEIGHT(S) | WEIGHT(S) |
w | w1 [w2 w3...wn] |
</file> | </file> |
w is position of weight if present; can be empty | w1 [w2 w3...wn] are position of weight(s) if present; can be empty (which means weight of 1 or no weight). Either there is a single weight, the same for all traits, or one weight per trait in which case ''ntrait'' positions are needed in this line. See [[readme.blupf90plus#weights|blupf90+ section on WEIGHTS]] for details. |
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<file> | <file> |
the default is 3 | the default is 3 |
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all pedigrees are loaded if p=0. To consider all ancestors to be traced back from genotyped and phenotyped animals, put a large number like 100. With p=0, RENUMF90 tries to include all animals found in the raw pedigree file even if the animals in the pedigree are not related to the animals with phenotype or genotype. Thus, p=0 is not recommended. | all pedigrees are loaded if p=0. This is the fastest as it reads the pedigree file only once. However, if you want to extract the informative animals (genotyped and phenotyped animals + their ancestors traced back) put a large number like 100. With p=0, RENUMF90 tries to include all animals found in the raw pedigree file even if the animals in the pedigree are not related to the animals with phenotype or genotype. Thus, p=0 is not recommended unless your pedigree file is already prepared and consists in the informative animals or the animals of interest. |
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