readme.renumf90
Differences
This shows you the differences between two versions of the page.
Both sides previous revisionPrevious revisionNext revision | Previous revisionNext revisionBoth sides next revision | ||
readme.renumf90 [2023/03/02 01:08] – [Options] andres | readme.renumf90 [2023/03/03 03:59] – [Fields in the parameter file] dani | ||
---|---|---|---|
Line 232: | Line 232: | ||
// | // | ||
* ' | * ' | ||
- | * ' | + | * ' |
* 'self x' - Calculates inbreeding with selfing, where x is the column in the pedigree file with the number of selfing generation | * 'self x' - Calculates inbreeding with selfing, where x is the column in the pedigree file with the number of selfing generation | ||
* ' | * ' | ||
Line 253: | Line 253: | ||
//r_type// could be: | //r_type// could be: | ||
* ' | * ' | ||
- | * " | + | * " |
< | < | ||
Line 262: | Line 262: | ||
* //r1-rq// specifies positions of covariables if r_type=' | * //r1-rq// specifies positions of covariables if r_type=' | ||
- | * //r1// is order of legendre polynomial and //r2// is position of covariable if r_type=' | + | * //r1// is order of legendre polynomial and //r2// is position of covariable if r_type=' |
< | < | ||
Line 341: | Line 341: | ||
where //nn// is the new size. | where //nn// is the new size. | ||
- | - the maximun | + | - the maximum |
< | < | ||
OPTION max_field_readline nn | OPTION max_field_readline nn | ||
Line 358: | Line 358: | ||
allows choosing a method for inbreeding calculation. The inbreeding coefficients are used later (in the other programs) to set up the coefficients for the A-inverse. Existing options are: | allows choosing a method for inbreeding calculation. The inbreeding coefficients are used later (in the other programs) to set up the coefficients for the A-inverse. Existing options are: | ||
- | + | * 7: Recursive tabular with self breeding generations . This method is for populations with selfing, i.e. wheat. | |
+ | * 6: Hybrid parallel computing which is basically a parallel (OMP) version of Meuwissen and Luo (1992) | ||
+ | * 5: method of Tier (1990) | ||
+ | * 4: recursive tabular method | ||
+ | * 3: Modified Colleau by Sargolzaei et al. (2005) | ||
+ | * 2: Modified Meuwissen & Luo by Sargolzaei & Iwaisaki (2004) | ||
+ | * 1: Meuwissen and Luo (1992) | ||
+ | the default is method 1, and speed-ups are made using method 6 but this requires using several threads (e.g. using '' | ||
The end of the parameter file for '' | The end of the parameter file for '' |
readme.renumf90.txt · Last modified: 2024/05/22 18:53 by dani