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| readme.renumf90 [2023/03/02 01:15] – [Options] andres | readme.renumf90 [2023/03/03 03:59] – [Fields in the parameter file] dani |
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| //inb_type// could be: | //inb_type// could be: |
| * 'pedigree' - the program computes inbreeding coefficients with Meuwissen and Luo (1992) using the pedigree to be saved in renaddxx.ped; calculated inbreeding coefficients will be saved in a file "renf90.inb" with the original ID | * 'pedigree' - the program computes inbreeding coefficients with Meuwissen and Luo (1992) using the pedigree to be saved in renaddxx.ped; calculated inbreeding coefficients will be saved in a file "renf90.inb" with the original ID |
| * 'file' - the program reads inbreeding coefficients from an external file. You should put the filename after 'file' e.g. 'file inbreeding.txt'. The file has at least 2 columns: original_ID and inbreeding value (from 0.0 to 1.0). The program just skips unnecessary IDs | * 'file' - the program reads inbreeding coefficients from an external file. You should put the filename after 'file' e.g. 'file inbreeding.txt'. For instance a file "renf90.inb" (see above) from a previous run can be used. The file has at least 2 columns: original_ID and inbreeding value (from 0.0 to 1.0). The program just skips unnecessary IDs |
| * 'self x' - Calculates inbreeding with selfing, where x is the column in the pedigree file with the number of selfing generation | * 'self x' - Calculates inbreeding with selfing, where x is the column in the pedigree file with the number of selfing generation |
| * 'no-inbreeding' - turn inbreeding calculation off in RENUMF90 ≥ v1.157 | * 'no-inbreeding' - turn inbreeding calculation off in RENUMF90 ≥ v1.157 |
| //r_type// could be: | //r_type// could be: |
| * 'data' if covariables for random regressions are in the data | * 'data' if covariables for random regressions are in the data |
| * "legendre' if legendre plynomials are to be generated from a single data variable; not yet implemented | * "legendre' if legendre plynomials are to be generated from a single data variable; fully implemented now |
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| <file> | <file> |
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| * //r1-rq// specifies positions of covariables if r_type='data' | * //r1-rq// specifies positions of covariables if r_type='data' |
| * //r1// is order of legendre polynomial and //r2// is position of covariable if r_type='legendre'; not yet implemented | * //r1// is order of legendre polynomial and //r2// is position of covariable if r_type='legendre' |
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| <file> | <file> |
