Differences

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--- readme.renumf90 [2023/03/02 01:15] – [Options] andres
+++ readme.renumf90 [2023/03/08 08:53] – [Additive Pedigree File] dani
@@ Line 232: / Line 232: @@
 //inb_type// could be:
   * 'pedigree' - the program computes inbreeding coefficients with Meuwissen and Luo (1992) using the pedigree to be saved in renaddxx.ped; calculated inbreeding coefficients will be saved in a file "renf90.inb" with the original ID
-  * 'file' - the program reads inbreeding coefficients from an external file. You should put the filename after 'file' e.g. 'file inbreeding.txt'. The file has at least 2 columns: original_ID and inbreeding value (from 0.0 to 1.0). The program just skips unnecessary IDs
+  * 'file' - the program reads inbreeding coefficients from an external file. You should put the filename after 'file' e.g. 'file inbreeding.txt'. For instance a file "renf90.inb" (see above) from a previous run can be used. The file has at least 2 columns: original_ID and inbreeding value (from 0.0 to 1.0). The program just skips unnecessary IDs
   * 'self x' - Calculates inbreeding with selfing, where x is the column in the pedigree file with the number of selfing generation
   * 'no-inbreeding' - turn inbreeding calculation off in RENUMF90 ≥ v1.157
@@ Line 253: / Line 253: @@
 //r_type// could be:
   * 'data' if covariables for random regressions are in the data
-  * "legendre' if legendre plynomials are to be generated from a single data variable; not yet implemented
+  * "legendre' if legendre plynomials are to be generated from a single data variable; fully implemented now
 <file>
@@ Line 262: / Line 262: @@
   * //r1-rq// specifies positions of covariables if r_type='data'
-  * //r1// is order of legendre polynomial and //r2// is position of covariable if r_type='legendre'; not yet implemented
+  * //r1// is order of legendre polynomial and //r2// is position of covariable if r_type='legendre'
 <file>
@@ Line 404: / Line 404: @@
 ) parent 1 number or unknown parent group number for parent 1
 ) parent 2 number or unknown parent group number for parent 2
-) 3 minus number of known parents
+) 3 minus number of known parents or inbreeding code if inbreeding is used (inbreeding is default now)
 ) known or estimated year of birth (0 if not provided)
 ) number of known parents (parents might be eliminated if not contributing;