Differences

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--- readme.renumf90 [2023/06/12 16:47] – [Options] andres
+++ readme.renumf90 [2024/05/15 18:43] – [Options] dani
@@ Line 351: / Line 351: @@
 </file>
-allows indicating that missing value is the number x (e.g. 999) for instance if 0 is a valid record.
+allows indicating that the missing value is the number x (e.g., 999), for instance, if 0 is a valid record. This is only to represent the missing value in the data. If there are covariables in the data, 0 is treated as a value, not missing information. Missing pedigree is always 0 and cannot be changed to another value.
 <file>
@@ Line 365: / Line 365: @@
 <file>
-OPTION inbreeding_method 1
+OPTION inbreeding_method m
 </file>
-allows choosing a method for inbreeding calculation. The inbreeding coefficients are used later (in the other programs) to set up the coefficients for the A-inverse. Existing options are:
+allows choosing a method for inbreeding calculation. The inbreeding coefficients are used later (in the other programs) to set up the coefficients for the A-inverse. Acceptable values for m are:
+: Meuwissen and Luo (1992)
+: Modified Meuwissen & Luo by Sargolzaei & Iwaisaki (2004)
+: Modified Colleau by Sargolzaei et al. (2005)
+: recursive tabular method
+: method of Tier (1990)
+: Hybrid parallel computing, which is basically a parallel (OMP) version of Meuwissen and Luo (1992)
+: Recursive tabular with self-breeding generations. For populations with selfing, i.e., wheat
-  * 7: Recursive tabular with self breeding generations . This method is for populations with selfing, i.e. wheat.
+The default is method 1. Large speed-ups are made using method 6, but this requires using several threads (e.g., using ''OMP_NUM_THREADS=4'')
-  * 6: Hybrid parallel computing which is basically a parallel (OMP) version of Meuwissen and Luo (1992)
-  * 5: method of Tier (1990)
-  * 4: recursive tabular method
-  * 3: Modified Colleau by Sargolzaei et al. (2005)
-  * 2: Modified Meuwissen & Luo by Sargolzaei & Iwaisaki (2004)
-  * 1: Meuwissen and Luo (1992)
-the default is method 1. Large speed-ups are made using method 6 but this requires using several threads (e.g. using ''OMP_NUM_THREADS=4'')
 The end of the parameter file for ''RENUMF90'' can contain many lines beginning with OPTION.
-All of these lines are passed to parameter file renf90.par to be used by application programs.
+All of these lines are passed to the parameter file renf90.par to be used by application programs.