readme.renumf90
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readme.renumf90 [2023/06/12 16:47] – [Options] andres | readme.renumf90 [2024/05/22 18:27] – dani | ||
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=======RENUMF90====== | =======RENUMF90====== | ||
A renumbering program for the '' | A renumbering program for the '' | ||
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//r_type// could be: | //r_type// could be: | ||
* ' | * ' | ||
- | * " | + | * " |
< | < | ||
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</ | </ | ||
- | allows indicating that missing value is the number x (e.g. 999) for instance if 0 is a valid record. | + | allows indicating that the missing value is the number x (e.g., 999), for instance, if 0 is a valid record. This is only to represent the missing value in the data. If there are covariables in the data, 0 is treated as a value, not missing information. Missing pedigree is always 0 and cannot be changed to another value. |
< | < | ||
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OPTION no_basic_statistics | OPTION no_basic_statistics | ||
</ | </ | ||
- | avoids the computation of basic statistics (min, max, correlations...) which take a certain time for very large data file. | + | avoids the computation of basic statistics (min, max, correlations, ...), which take a certain time for very large data file. |
< | < | ||
- | OPTION inbreeding_method | + | OPTION inbreeding_method |
</ | </ | ||
- | allows choosing a method for inbreeding calculation. The inbreeding coefficients are used later (in the other programs) to set up the coefficients for the A-inverse. | + | allows choosing a method for inbreeding calculation. The inbreeding coefficients are used later (in the other programs) to set up the coefficients for the A-inverse. |
- | + | ||
- | | + | |
- | | + | |
- | | + | 3: Modified Colleau by Sargolzaei et al. (2005) |
- | | + | |
- | * 3: Modified Colleau by Sargolzaei et al. (2005) | + | 5: method of Tier (1990) |
- | | + | |
- | | + | 7: Recursive tabular with self-breeding generations. For populations with selfing, i.e., wheat |
- | the default is method 1. Large speed-ups are made using method 6 but this requires using several threads (e.g. using '' | + | The default is method 1. Large speed-ups are made using method 6, but this requires using several threads (e.g., using '' |
The end of the parameter file for '' | The end of the parameter file for '' | ||
- | All of these lines are passed to parameter file renf90.par to be used by application programs. | + | All of these lines are passed to the parameter file renf90.par to be used by application programs. |
readme.renumf90.txt · Last modified: 2024/05/22 18:53 by dani