readme.renumf90
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readme.renumf90 [2024/05/15 18:40] – [Options] dani | readme.renumf90 [2024/05/22 18:47] – [Options] dani | ||
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=======RENUMF90====== | =======RENUMF90====== | ||
A renumbering program for the '' | A renumbering program for the '' | ||
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//r_type// could be: | //r_type// could be: | ||
* ' | * ' | ||
- | * " | + | * " |
< | < | ||
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=====Options===== | =====Options===== | ||
- | The following options can added at the end of the parameter file to redefine | + | The following options can be added at the end of the parameter file to redefine |
parameters used to read the input file: | parameters used to read the input file: | ||
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where //nn// is the new size. | where //nn// is the new size. | ||
- | - the size of th record length (default = 800) | + | - the size of the record length (default = 800) |
< | < | ||
OPTION max_string_readline nn | OPTION max_string_readline nn | ||
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OPTION no_basic_statistics | OPTION no_basic_statistics | ||
</ | </ | ||
- | avoids the computation of basic statistics (min, max, correlations...) which take a certain time for very large data file. | + | avoids the computation of basic statistics (min, max, correlations, ...), which take a certain time for very large data file. |
< | < | ||
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</ | </ | ||
- | allows choosing a method for inbreeding calculation. The inbreeding coefficients are used later (in the other programs) to set up the coefficients for the A-inverse. | + | allows choosing a method for inbreeding calculation. The inbreeding coefficients are used later (in the other programs) to set up the coefficients for the A-inverse. |
| | ||
- | | + | 1: Meuwissen and Luo (1992) |
- | | + | 2: Modified Meuwissen & Luo by Sargolzaei & Iwaisaki (2004) |
- | | + | 3: Modified Colleau by Sargolzaei et al. (2005) |
- | | + | 4: recursive tabular method |
- | | + | 5: method of Tier (1990) |
- | | + | 6: Hybrid parallel computing, which is basically a parallel (OMP) version of Meuwissen and Luo (1992) |
- | | + | 7: Recursive tabular with self-breeding generations. For populations with selfing, i.e., wheat |
The default is method 1. Large speed-ups are made using method 6, but this requires using several threads (e.g., using '' | The default is method 1. Large speed-ups are made using method 6, but this requires using several threads (e.g., using '' |
readme.renumf90.txt · Last modified: 2024/05/22 18:53 by dani