readme.thrgibbs1
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readme.thrgibbs1 [2012/05/29 13:18] – shogo | readme.thrgibbs1 [2012/05/29 17:07] – shogo | ||
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- | Gibbs sampler for threshold-linear mixed models | + | Gibbs sampler for threshold-linear mixed models. The original program (THRGIBBSF90) was written by DeukHwan Lee in 2001 based on GIBBS2F90. Rewritten by Shogo Tsuruta in 2004. |
=====Summary===== | =====Summary===== | ||
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- | Based on THRGIBBSF90 written by DeukHwan Lee at the University of Georgia, 2001 based on GIBBS2F90. Rewritten by Shogo Tsuruta, 2004. Last modified 09/05/2007 | ||
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- | =====Functionality===== | ||
THRGIBBS1F90 implements Gibbs sampler for mixed threshold-linear models involving multiple categorical and linear variables. Thresholds and variances can be estimated or assumed. Another version of thrgibbs1f90b for binary responses is available. | THRGIBBS1F90 implements Gibbs sampler for mixed threshold-linear models involving multiple categorical and linear variables. Thresholds and variances can be estimated or assumed. Another version of thrgibbs1f90b for binary responses is available. | ||
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OPTION cont 10000 | OPTION cont 10000 | ||
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- | " | + | " |
- | The user can restart the program from the last run. | + | |
< | < | ||
OPTION prior 5 | OPTION prior 5 | ||
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OPTION thresholds 0.0 1.0 2.0 | OPTION thresholds 0.0 1.0 2.0 | ||
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- | Set the fixed thresholds. No need to set 0 for binary traits | + | Set the fixed thresholds. No need to set 0 for binary traits. |
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- | OPTION residual 1 | + | OPTION residual 1. |
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- | Set the residual variance = 1 | + | Set the residual variance = 1. |
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- | OPTION censored xx | + | OPTION censored xx. |
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Negative values of the last category in the data set indicate censored records. " | Negative values of the last category in the data set indicate censored records. " | ||
readme.thrgibbs1.txt · Last modified: 2024/03/25 18:22 by 127.0.0.1