readme.thrgibbs1
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| Both sides previous revisionPrevious revisionNext revision | Previous revisionNext revisionBoth sides next revision | ||
| readme.thrgibbs1 [2012/05/29 16:51] – shogo | readme.thrgibbs1 [2012/08/17 15:11] – ignacio | ||
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| Line 18: | Line 18: | ||
| OPTION fixed_var all | OPTION fixed_var all | ||
| </ | </ | ||
| - | store all samples for solutions in " | + | Store all samples for solutions in " |
| < | < | ||
| OPTION fixed_var all 1 2 3 | OPTION fixed_var all 1 2 3 | ||
| </ | </ | ||
| - | store all samples for solutions in " | + | Store all samples for solutions in " |
| < | < | ||
| OPTION fixed_var mean | OPTION fixed_var mean | ||
| </ | </ | ||
| - | only posterior means and SD for solutions are calculated for all effects in " | + | Only posterior means and SD for solutions are calculated for all effects in " |
| < | < | ||
| OPTION fixed_var mean 1 2 3 | OPTION fixed_var mean 1 2 3 | ||
| - | only posterior means and SD for solutions are calculated for effects 1, 2, and 3 in " | + | Only posterior means and SD for solutions are calculated for effects 1, 2, and 3 in " |
| </ | </ | ||
| < | < | ||
| OPTION solution all | OPTION solution all | ||
| </ | </ | ||
| - | store all samples for solutions in " | + | Store all samples for solutions in " |
| < | < | ||
| OPTION solution all 1 2 3 | OPTION solution all 1 2 3 | ||
| </ | </ | ||
| - | store all samples for solutions in " | + | Store all samples for solutions in " |
| < | < | ||
| OPTION solution mean | OPTION solution mean | ||
| Line 46: | Line 46: | ||
| OPTION solution mean 1 2 3 | OPTION solution mean 1 2 3 | ||
| </ | </ | ||
| - | only posterior means and SD for solutions are calculated for effects 1, 2, and 3 in " | + | Only posterior means and SD for solutions are calculated for effects 1, 2, and 3 in " |
| < | < | ||
| OPTION cont 10000 | OPTION cont 10000 | ||
| Line 52: | Line 52: | ||
| " | " | ||
| < | < | ||
| - | OPTION prior 5 | + | OPTION prior 5 2 -1 5 |
| </ | </ | ||
| - | " | + | The (co)variance |
| + | Degree of belief for all random effects should be specified using the following structure: | ||
| + | OPTION prior eff1 db1 eff2 db2 ... effn dbn -1 dbres\\ | ||
| + | effx correspond to the effect number and dbx to the degree of belief for this random effect, -1 corresponds to the degree of belief of the residual variance.\\ | ||
| + | In this example 2 is the degree of belief for the 5th effect, and 5 is the degree of belief for the residual.\\ | ||
| < | < | ||
| OPTION seed 123 -432 | OPTION seed 123 -432 | ||
| Line 62: | Line 66: | ||
| OPTION thresholds 0.0 1.0 2.0 | OPTION thresholds 0.0 1.0 2.0 | ||
| </ | </ | ||
| - | set the fixed thresholds. No need to set 0 for binary traits. | + | Set the fixed thresholds. No need to set 0 for binary traits. |
| < | < | ||
| OPTION residual 1. | OPTION residual 1. | ||
| </ | </ | ||
| - | set the residual variance = 1. | + | Set the residual variance = 1. |
| < | < | ||
| OPTION censored xx. | OPTION censored xx. | ||
| </ | </ | ||
| Negative values of the last category in the data set indicate censored records. " | Negative values of the last category in the data set indicate censored records. " | ||
| - | |||
readme.thrgibbs1.txt · Last modified: 2024/03/25 18:22 by 127.0.0.1