readme.thrgibbs1
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readme.thrgibbs1 [2012/08/17 15:11] – ignacio | readme.thrgibbs1 [2014/07/10 16:38] – shogo | ||
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====== THRGIBBS1F90 ====== | ====== THRGIBBS1F90 ====== | ||
- | \\ | ||
- | Gibbs sampler for threshold-linear mixed models. The original program (THRGIBBSF90) was written by DeukHwan Lee in 2001 based on GIBBS2F90. Rewritten by Shogo Tsuruta in 2004. | ||
=====Summary===== | =====Summary===== | ||
+ | Gibbs sampler for threshold-linear mixed models. The original program (THRGIBBSF90) was written by DeukHwan Lee in 2001 based on GIBBS2F90 and formulas by Rob Tempelman. Rewritten by Shogo Tsuruta in 2004. See PREGSF90 with genotypes (SNP) for options. | ||
+ | \\ | ||
THRGIBBS1F90 implements Gibbs sampler for mixed threshold-linear models involving multiple categorical and linear variables. Thresholds and variances can be estimated or assumed. Another version of thrgibbs1f90b for binary responses is available. | THRGIBBS1F90 implements Gibbs sampler for mixed threshold-linear models involving multiple categorical and linear variables. Thresholds and variances can be estimated or assumed. Another version of thrgibbs1f90b for binary responses is available. | ||
+ | \\ | ||
+ | See PREGSF90 with genotypes (SNP) for options. | ||
=====Parameters===== | =====Parameters===== | ||
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OPTION solution all | OPTION solution all | ||
</ | </ | ||
- | Store all samples for solutions in " | + | Store all samples for solutions in " |
< | < | ||
OPTION solution all 1 2 3 | OPTION solution all 1 2 3 | ||
</ | </ | ||
- | Store all samples for solutions in " | + | Store all samples for solutions in " |
< | < | ||
OPTION solution mean | OPTION solution mean | ||
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Set the residual variance = 1. | Set the residual variance = 1. | ||
< | < | ||
- | OPTION censored | + | OPTION censored |
</ | </ | ||
- | Negative values of the last category in the data set indicate censored records. "xx" determines the lower and upper limit of the category + xx when sampling from the distribution. | + | Negative values of the last category in the data set indicate censored records. "1 0" determines |
+ | < | ||
+ | OPTION SNP_file snp | ||
+ | </ | ||
+ | Specify the SNP file name to use genotype data. |
readme.thrgibbs1.txt · Last modified: 2024/03/25 18:22 by 127.0.0.1