readme.thrgibbs1
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readme.thrgibbs1 [2013/07/17 16:23] – shogo | readme.thrgibbs1 [2014/07/10 16:38] – shogo | ||
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=====Summary===== | =====Summary===== | ||
- | Gibbs sampler for threshold-linear mixed models. The original program (THRGIBBSF90) was written by DeukHwan Lee in 2001 based on GIBBS2F90. Rewritten by Shogo Tsuruta in 2004. See PREGSF90 with genotypes (SNP) for options. | + | Gibbs sampler for threshold-linear mixed models. The original program (THRGIBBSF90) was written by DeukHwan Lee in 2001 based on GIBBS2F90 |
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THRGIBBS1F90 implements Gibbs sampler for mixed threshold-linear models involving multiple categorical and linear variables. Thresholds and variances can be estimated or assumed. Another version of thrgibbs1f90b for binary responses is available. | THRGIBBS1F90 implements Gibbs sampler for mixed threshold-linear models involving multiple categorical and linear variables. Thresholds and variances can be estimated or assumed. Another version of thrgibbs1f90b for binary responses is available. | ||
+ | \\ | ||
+ | See PREGSF90 with genotypes (SNP) for options. | ||
=====Parameters===== | =====Parameters===== | ||
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OPTION solution all | OPTION solution all | ||
</ | </ | ||
- | Store all samples for solutions in " | + | Store all samples for solutions in " |
< | < | ||
OPTION solution all 1 2 3 | OPTION solution all 1 2 3 | ||
</ | </ | ||
- | Store all samples for solutions in " | + | Store all samples for solutions in " |
< | < | ||
OPTION solution mean | OPTION solution mean | ||
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Set the residual variance = 1. | Set the residual variance = 1. | ||
< | < | ||
- | OPTION censored | + | OPTION censored |
</ | </ | ||
- | Negative values of the last category in the data set indicate censored records. "xx" determines the lower and upper limit of the category + xx when sampling from the distribution. | + | Negative values of the last category in the data set indicate censored records. "1 0" determines |
+ | < | ||
OPTION SNP_file snp | OPTION SNP_file snp | ||
</ | </ | ||
Specify the SNP file name to use genotype data. | Specify the SNP file name to use genotype data. | ||
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readme.thrgibbs1.txt · Last modified: 2024/03/25 18:22 by 127.0.0.1