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--- readme.thrgibbs1 [2016/10/17 19:52] – [Options] shogo
+++ readme.thrgibbs1 [2017/10/26 08:45] – [Options] shogo
@@ Line 53: / Line 53: @@
 </file>
 "10000" is the number of samples run previously. The user can restart the program from the last run. This option requires "binary_final_solutions", "gibbs_samples", and "fort.99" files.
+When using "OPTION cont", all output files will be replaced by new ones. Before running with this option, all files should be backed up.
 <file>
 OPTION prior 5 2 -1 5
@@ Line 72: / Line 73: @@
 OPTION residual 1
 </file>
-Set the residual variance = 1.
+Set the residual variance = 1 (no need for binary traits).
 <file>
-OPTION pos_def
+OPTION pos_def x.x
 </file>
-Specify checking pos-def for fixed effects.
+Specify checking pos-def for fixed effects where x.x is a tolerance (default=1d-08).
 <file>
 OPTION censored 1 0