readme.thrgibbs1
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| Both sides previous revisionPrevious revisionNext revision | Previous revisionNext revisionBoth sides next revision | ||
| readme.thrgibbs1 [2018/04/09 23:38] – [Options] shogo | readme.thrgibbs1 [2018/04/26 09:21] – [Options] shogo | ||
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| < | < | ||
| OPTION fixed_var mean 1 2 3 | OPTION fixed_var mean 1 2 3 | ||
| - | Only posterior means and SD for solutions are calculated for effects 1, 2, and 3 in " | ||
| </ | </ | ||
| + | Only posterior means and SD for solutions are calculated for effects 1, 2, and 3 in " | ||
| < | < | ||
| OPTION solution all | OPTION solution all | ||
| </ | </ | ||
| + | Caution: this option will create a huge output solution file when you run many rounds and/or use a large model. | ||
| Store all samples for solutions in " | Store all samples for solutions in " | ||
| < | < | ||
| OPTION solution all 1 2 3 | OPTION solution all 1 2 3 | ||
| </ | </ | ||
| + | Caution: this option will create a huge output solution file when you run many rounds and/or use a large model. | ||
| Store all samples for solutions in " | Store all samples for solutions in " | ||
| < | < | ||
| Line 73: | Line 75: | ||
| OPTION residual 1 | OPTION residual 1 | ||
| </ | </ | ||
| - | Set the residual variance = 1 (no need for binary traits). | + | Set the residual variance = 1 for categorical traits. For binary traits, the residual variance is automatically set to 1, so no need to use this option. |
| < | < | ||
| OPTION pos_def x.x | OPTION pos_def x.x | ||
| Line 86: | Line 88: | ||
| </ | </ | ||
| Specify the SNP file name to use genotype data. | Specify the SNP file name to use genotype data. | ||
| - | |||
| ==== Save intermediate results for "cold start" ==== | ==== Save intermediate results for "cold start" ==== | ||
readme.thrgibbs1.txt · Last modified: 2024/03/25 18:22 by 127.0.0.1