readme.thrgibbs1
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readme.thrgibbs1 [2018/04/12 20:25] – [Options] shogo | readme.thrgibbs1 [2018/05/31 04:41] – [Options] shogo | ||
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< | < | ||
OPTION fixed_var mean 1 2 3 | OPTION fixed_var mean 1 2 3 | ||
- | Only posterior means and SD for solutions are calculated for effects 1, 2, and 3 in " | ||
</ | </ | ||
+ | Only posterior means and SD for solutions are calculated for effects 1, 2, and 3 in " | ||
< | < | ||
OPTION solution all | OPTION solution all | ||
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</ | </ | ||
Only posterior means and SD for solutions are calculated for effects 1, 2, and 3 in " | Only posterior means and SD for solutions are calculated for effects 1, 2, and 3 in " | ||
+ | < | ||
+ | OPTION save_halfway_samples 5000 | ||
+ | </ | ||
+ | The program saves every " | ||
+ | < | ||
< | < | ||
OPTION cont 10000 | OPTION cont 10000 | ||
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" | " | ||
When using " | When using " | ||
- | < | ||
OPTION prior 5 2 -1 5 | OPTION prior 5 2 -1 5 | ||
</ | </ | ||
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OPTION residual 1 | OPTION residual 1 | ||
</ | </ | ||
- | Set the residual variance = 1 (no need for binary traits). | + | Set the residual variance = 1 for categorical traits. For binary traits, the residual variance is automatically set to 1, so no need to use this option. |
< | < | ||
OPTION pos_def x.x | OPTION pos_def x.x | ||
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</ | </ | ||
Specify the SNP file name to use genotype data. | Specify the SNP file name to use genotype data. | ||
- | |||
==== Save intermediate results for "cold start" ==== | ==== Save intermediate results for "cold start" ==== | ||
readme.thrgibbs1.txt · Last modified: 2024/03/25 18:22 by 127.0.0.1