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start [2012/05/09 00:45] – test | start [2022/06/29 19:07] – [Courses] dani | ||
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- | FAQ for BLUPF90 | + | ====== |
- | Input files | + | === Now with support for genomic selection === |
- | data | + | //Ignacy Misztal and collaborators, |
- | pedigree | + | |
- | Data preparation program | + | BLUPF90 family of programs is a collection of software in Fortran 90/95 for mixed model computations in animal breeding. The goal of the software is to be as simple as with a matrix package and as efficient as in a programming language. |
+ | |||
+ | For variance component estimation, the family offers choices for simple and complicated models; see paper {{reliable_computing.pdf| “Reliable computing in estimation of variance components” }}. From 2009 the programs are successively modified for genomic selection using a {{single_step_8.pdf|single-step}} approach (or ssGBLUP) by Ignacio Aguilar and Shogo Tsuruta. | ||
- | renumf90 (ver 1.92) read me | + | For support, join [[https:// |
- | examples | + | |
- | Frequent mistakes in a parameter file for BLUPF90 programs | + | Please visit [[http:// |
- | parameter files for various models | + | === Troubleshooting === |
- | examples | + | |
- | REML | + | :!: If the software crashes with segmentation fault, please change settings in your operating system. |
+ | See [[faq.segfault|FAQ: | ||
- | remlf90 (ver 1.76) read me: EM algorithm - PDF | + | ====== Headline ====== |
- | airemlf90 (ver 1.99) read me: Average Information REML + REMLF90 - Standard Errors (PDF) | + | |
- | Gibbs sampling | + | * [[History]] |
- | OPTIONs for priors and degrees | + | * [[Modules]] |
+ | * [[Condition | ||
+ | * [[Distribution|Distribution / Download]] | ||
+ | * [[Documentation|Documentation / Manual / Tutorial]] | ||
+ | * [[Application programs|Application program details]] | ||
+ | * [[Support]] | ||
+ | * [[FAQ]] | ||
+ | * [[Tricks|Tricks / Tips]] | ||
+ | * [[To Do]] | ||
+ | * [[data: | ||
+ | * [[undoc: | ||
- | gibbs1f90 (ver 1.42) read me: Faster than GIBBS2F90 without missing traits | + | ====== Courses ====== |
- | gibbs2f90 (ver 1.76) read me | + | |
- | gibbs3f90 (ver 1.77) read me: Heterogeneous residual variances | + | |
- | thrgibbs1f90(b) (ver 2.100) read me: Threshold model + linear model | + | |
- | Post-Gibbs Analysis | + | * [[Courses]] |
- | postgibbsf90 (ver 3.02) read me: Needs Gibbs samples and gnuplot (use postgibbsold for old Gibbs sampler programs) | ||
- | BLUP | + | ===== WCGALP UGA Night ===== |
- | blupf90 (ver 1.45) read me: SOR, FSPAK or PCG - PDF | ||
- | blup90iod2 (ver 3.78) read me: For a large number of equations (available only under some conditions) | ||
- | cblup90iod2 (ver 3.16) read me: Threshold model + linear model for a large number of equations (available only under some conditions) | ||
- | Accuracy | ||
- | |||
- | accf90 : (ver 1.63) read me: Accuracy (reliability) for a large number of animals (available only under some conditions) | ||
- | |||
- | Genomic Analysis | ||
- | |||
- | preGSf90 (ver 1.6) read me: Pre-analysis of genomic programs |
start.txt · Last modified: 2024/04/04 13:54 by dani