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start [2012/05/10 19:48] – ignacy | start [2014/05/23 15:47] – ignacy | ||
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=== now with support for genomic selection === | === now with support for genomic selection === | ||
- | //Ignacy Misztal and collaborators, | + | //Ignacy Misztal and collaborators, |
- | BLUPF90 family of programs is a collection of software in Fortran 90/95 for mixed model computations in animal breeding. The goal of the software is to be as simple as with a matrix package and as efficient as in a programming language. | + | |
+ | BLUPF90 family of programs is a collection of software in Fortran 90/95 for mixed model computations in animal breeding. The goal of the software is to be as simple as with a matrix package and as efficient as in a programming language. | ||
- | For variance component estimation, the family offers choices for simple and complicated models; see paper “Reliable computing in estimation of variance components”. From 2009 the programs are successively modified for genomic selection using a single-step approach (or ssGBLUP) by Ignacio Aguilar and Shogo Tsuruta. | + | For variance component estimation, the family offers choices for simple and complicated models; see paper {{reliable_computing.pdf| |
====== Headline ====== | ====== Headline ====== | ||
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* [[Support]] | * [[Support]] | ||
* [[FAQ]] | * [[FAQ]] | ||
- | + | * [[Tricks]] | |
- | FAQ for BLUPF90 programs | + | * [[Course materials |
- | Input files | + | * [[Course materials |
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- | data | + | |
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- | Data preparation program | + | |
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- | renumf90 (ver 1.92) read me | + | |
- | examples | + | |
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- | Frequent mistakes in a parameter file for BLUPF90 programs | + | |
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- | parameter files for various models | + | |
- | examples | + | |
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- | REML | + | |
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- | remlf90 (ver 1.76) read me: EM algorithm | + | |
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- | Gibbs sampling | + | |
- | OPTIONs for priors and degrees of belief, for restarting | + | |
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- | gibbs1f90 (ver 1.42) read me: Faster than GIBBS2F90 without missing traits | + | |
- | gibbs2f90 (ver 1.76) read me | + | |
- | gibbs3f90 (ver 1.77) read me: Heterogeneous residual variances | + | |
- | thrgibbs1f90(b) (ver 2.100) read me: Threshold model + linear model | + | |
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- | Post-Gibbs Analysis | + | |
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- | postgibbsf90 (ver 3.02) read me: Needs Gibbs samples and gnuplot (use postgibbsold for old Gibbs sampler programs) | + | |
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- | BLUP | + | |
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- | blupf90 (ver 1.45) read me: SOR, FSPAK or PCG - PDF | + | |
- | blup90iod2 (ver 3.78) read me: For a large number of equations (available only under some conditions) | + | |
- | cblup90iod2 (ver 3.16) read me: Threshold model + linear model for a large number of equations (available only under some conditions) | + | |
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- | Accuracy | + | |
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- | accf90 : (ver 1.63) read me: Accuracy (reliability) for a large number of animals (available only under some conditions) | + | |
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- | Genomic Analysis | + | |
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- | preGSf90 (ver 1.6) read me: Pre-analysis of genomic programs | + |
start.txt · Last modified: 2024/04/04 13:54 by dani