Differences

This shows you the differences between two versions of the page.

--- documentation [2019/09/05 15:38] – [Tutorial] yutaka
+++ documentation [2024/03/25 18:22] – external edit 127.0.0.1
@@ Line 1: / Line 1: @@
 ==== Documentation and manual ====
-BLUPF90 manual is available at {{:blupf90_ALL7.pdf|BLUPF90 manual}}
+BLUPF90 manual is available at {{:blupf90_ALL8.pdf|BLUPF90 manual}}
 \\
    * Click on [[FAQ]] to see which programs/options to use. Click on [[program sequence]] to see which programs need to be run in sequence.
-   * The whole philosophy of the suite  is in {{IMisztal.pdf}}.
+   * The whole philosophy of the suite is in {{IMisztal.pdf}}.
    * The detailed description and individual options of each program can be found in [[application_programs]].
+\\
+:!: How to cite the BLUPF90 manual:
+Misztal I., Tsuruta S., Lourenco D.A.L., Aguilar I., Legarra A., and Vitezica Z. 2014. Manual for BLUPF90 family of programs.
 ==== Tutorial ====
@@ Line 11: / Line 15: @@
 A tutorial of BLUPF90 programs is available as {{:tutorial_blupf90.pdf|Introduction to BLUPF90 suite programs}}.
 \\
-   * Revised in September, 2019.
+   * Revised in September 2019.
-   * This is an updated version of course note which we provided the participants in our Summer Course 2018.
+   * This is an updated version of the course note that we provided the participants in our Summer Course 2018.
    * The numerical examples used in this tutorial are available at Yutaka Masuda's Github repository (https://github.com/masuday/data/tree/master/tutorial).
-   * The source files of this tutorial is available at Github (https://github.com/masuday/Blupf90TutorialStandard). You can contribute to revise the tutorial on Github!
+   * The source files of this tutorial is also available on Github (https://github.com/masuday/Blupf90TutorialStandard). You can contribute to revise the tutorial on Github!
+Another more specific tutorial concerns the use of blupf90 software to analyze crosses using the theory of metafounders and SSGBLUP, and it is available at (http://genoweb.toulouse.inra.fr/~alegarra/ThreeWayDist/crosses_blupf90.pdf).
 ==== Legacy documentation ====
 The following is the original documentation of our programs. The manual has the same information.
-  - The main documentation which describes the parameter files, the use use of ''BLUPF90'' and the kind of models that can be fit: {{blupf90.pdf}}.
+  - The main documentation describes the parameter files, the use use of ''BLUPF90'', and the kind of models that can be fit: {{blupf90.pdf}}.
   - The documentation on the variance component estimator ''REMLF90'': {{remlf90.pdf }}.
-  - See course materials on genomic analyses. Alse see an example of genomic computations in  {{example_genomic.pdf}}.
+  - See course materials on genomic analyses. Also, see an example of genomic computations in  {{example_genomic.pdf}}.
 Those interested in programming can access [[http://nce.ads.uga.edu/~ignacy/course11.pdf|notes]] from a computing class in Fortran 95.
 The denseop, sparseop and fspak libraries have (outdated) {{denseop.pdf}} {{sparse90.pdf}} and {{fspak.pdf}} documentation.
-README's and documentation are hard to follow without an understanding of Mixed Models as applied to Animal Breeding. A free, highly recommended material is Larry Schaeffer's [[http://www.aps.uoguelph.ca/~lrs/ABModels/notesx.html|notes]].
+READMEs and documentation are hard to follow without an understanding of Mixed Models as applied to Animal Breeding. A free, highly recommended material is Larry Schaeffer's [[http://www.aps.uoguelph.ca/~lrs/ABModels/notesx.html|notes]].