faq
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faq [2019/03/28 19:48] – [FAQ: examples and options for BLUPF90 family programs] yutaka | faq [2020/11/30 21:52] – yutaka | ||
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* [[FAQ.windows|System Error]]: Received a message like "The program can't start because libiomp5md.dll is missing..." | * [[FAQ.windows|System Error]]: Received a message like "The program can't start because libiomp5md.dll is missing..." | ||
* [[FAQ.openmp|Better settings for OpenMP]]: How should I define the number of threads used with a program? | * [[FAQ.openmp|Better settings for OpenMP]]: How should I define the number of threads used with a program? | ||
+ | * [[FAQ.intellibs|Installation of Intel Libraries]]: | ||
- | ==== Frequent mistakes in data, pedigree, and parameter files for BLUPF90 programs ==== | + | ==== Variance Components ==== |
+ | |||
+ | * [[FAQ.vc|I got weird messages and nonsense estimates in AI REML. What is it?]] | ||
+ | |||
+ | ==== Frequent mistakes in data, pedigree, and parameter files for BLUPF90 programs | ||
* [[[[FAQ.data|data]] | * [[[[FAQ.data|data]] | ||
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* [[[[FAQ.example|examples]] | * [[[[FAQ.example|examples]] | ||
- | ==== Data preparation program | + | ==== Individual program ==== |
+ | |||
+ | === Data preparation program === | ||
* [[[[readme.renumf90|renumf90]] | * [[[[readme.renumf90|renumf90]] | ||
* [[[[FAQ.renum_example|examples]] | * [[[[FAQ.renum_example|examples]] | ||
- | ==== REML ==== | + | === REML === |
* [[readme.reml|remlf90]]: | * [[readme.reml|remlf90]]: | ||
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* [[readme.blupf90new|blupf90test]]: | * [[readme.blupf90new|blupf90test]]: | ||
- | ==== Gibbs sampler | + | === Gibbs sampler === |
OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed (known) variances | OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed (known) variances | ||
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* [[readme.thrgibbs3|thrgibbs3f90]]: | * [[readme.thrgibbs3|thrgibbs3f90]]: | ||
* [[readme.gibbsf90new|gibbsf90test]]: | * [[readme.gibbsf90new|gibbsf90test]]: | ||
+ | * [[faq.gibbs|General questions]]: | ||
- | ==== Post-Gibbs Analysis | + | === Post-Gibbs Analysis === |
* [[readme.postgibbs|postgibbsf90]]: | * [[readme.postgibbs|postgibbsf90]]: | ||
- | ==== BLUP ==== | + | |
+ | === BLUP === | ||
* [[readme.blupf90|blupf90]]: | * [[readme.blupf90|blupf90]]: | ||
+ | * [[readme.blupf90new|blupf90test]]: | ||
* [[readme.predictf90|predictf90]]: | * [[readme.predictf90|predictf90]]: | ||
* [[readme.pcg2|blup90iod2]]: | * [[readme.pcg2|blup90iod2]]: | ||
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* [[readme.thr1pcg|cblup90iod2]]: | * [[readme.thr1pcg|cblup90iod2]]: | ||
* [[blup90mbe2]]: | * [[blup90mbe2]]: | ||
- | ==== Accuracy (approximation) | + | |
+ | === Accuracy (approximation) === | ||
* [[readme.acc|accf90]]: | * [[readme.acc|accf90]]: | ||
* [[readme.accgs|accf90GS]]: | * [[readme.accgs|accf90GS]]: | ||
- | ==== Genomic Analysis | + | === Genomic Analysis === |
* [[readme.pregsf90|preGSf90]]: | * [[readme.pregsf90|preGSf90]]: |
faq.txt · Last modified: 2024/03/25 18:22 by 127.0.0.1