Differences

This shows you the differences between two versions of the page.

--- faq [2019/11/13 09:48] – [BLUP] shogo
+++ faq [2020/11/30 21:52] – yutaka
@@ Line 10: / Line 10: @@
     * [[FAQ.intellibs|Installation of Intel Libraries]]: For users with customized programs
-==== Frequent mistakes in data, pedigree, and parameter files for BLUPF90 programs ====
+==== Variance Components ====
+    * [[FAQ.vc|I got weird messages and nonsense estimates in AI REML. What is it?]]
+==== Frequent mistakes in data, pedigree, and parameter files for BLUPF90 programs =====
     * [[[[FAQ.data|data]]
@@ Line 17: / Line 21: @@
     * [[[[FAQ.example|examples]]
-==== Data preparation program ====
+==== Individual program ====
+=== Data preparation program ===
     * [[[[readme.renumf90|renumf90]]
     * [[[[FAQ.renum_example|examples]]
-==== REML ====
+=== REML ===
     * [[readme.reml|remlf90]]: EM algorithm
@@ Line 28: / Line 34: @@
     * [[readme.blupf90new|blupf90test]]: This is a beta version for a combined program of airemlf90 and blupf90
-==== Gibbs sampler ====
+=== Gibbs sampler ===
 OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed (known) variances
@@ Line 37: / Line 43: @@
     * [[readme.thrgibbs3|thrgibbs3f90]]: Threshold + linear model with heterogeneous residual variances
     * [[readme.gibbsf90new|gibbsf90test]]: This is a beta version for a combined Gibbs program of gibbs2f90, gibbs3f90, thrgibbs1f90, and thrgibbs3f90
+    * [[faq.gibbs|General questions]]: Common to all Gibbs samplers
-==== Post-Gibbs Analysis ====
+=== Post-Gibbs Analysis ===
     * [[readme.postgibbs|postgibbsf90]]: Statistics and graphics for convergence diagnosis and post-Gibbs analysis (use postgibbsold for old Gibbs sampler programs). The graphs are created with gnuplot, which must be pre-installed.
-==== BLUP ====
+=== BLUP ===
     * [[readme.blupf90|blupf90]]: (G)BLUP with SOR, FSPAK or PCG
@@ Line 51: / Line 59: @@
     * [[readme.thr1pcg|cblup90iod2]]: (G)BLUP with threshold + linear model for a large number of equations (available only under some conditions)
     * [[blup90mbe2]]: (G)BLUP for a large number of equations for multi-breed evaluations (available only under some conditions). The prior external EBV can be from other breeds, lines, foreign origins, ...
-==== Accuracy (approximation) ====
+=== Accuracy (approximation) ===
     * [[readme.acc|accf90]]: Accuracy (reliability) for a large number of animals (available only under some conditions)
     * [[readme.accgs|accf90GS]]: Accuracy (reliability) for a large number of animals with genotypes (available only under some conditions); requires options
-==== Genomic Analysis ====
+=== Genomic Analysis ===
     * [[readme.pregsf90|preGSf90]]: Pre-analysis of genomic programs with options, including options for postGSf90 (GWAS)